EST details — SGN-E392884

Search information 
Request: 392884Match: SGN-E392884
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181380Clone name: TUS-36-N2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181380 is on microarray TOM1 spot ID 1-1-7.2.15.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C19707 [cLED-27-L16] Trace: SGN-T55791 EST: SGN-E242072 Direction: 5' Facility: TIGR
Clone: SGN-C181380 [TUS-36-N2] Trace: SGN-T194116 EST: SGN-E392790 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E392884Length: 538 bp (801 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392884 [] (trimmed) GGGAAAGGGGGGCCAAATTCCCCAAAGAAAACCAAAATTAAAATTTTTCCACCTTTTTTAAACCAAAAAAAACCCCTGTCCACTTGGGACCATTA
AATTCCTAATTAAAAAAAGGCAAGGGTTCCTTGCCACAAACCCCCCACCTCTTTAAAAAGAAAGGGGCCGGCCAAAAAAATTTTAAAAAGGAACC
CCAAAGGTTACAAACTTGCCCCCCAAAAAAAAAAACCCGAACTTTAACTGGGGGGACCCTAACCCCCATTGTTACTTTTGGGGCCCCCCAAATTT
TTAAAAAATTCCCTGGACCCAAACCCCCCCCCCCCCCCCTATACCAAACTTCCACCCAAAAACCCGGGGGCCCGCCACCCCCCCCCTCTAAATTG
ATCCCCCCCCGAAAGGAAAAAAACCCCCTTTTTTGTTGCCCCCCCCTAAATTTAAAAAACAACCCCCCCAAACTTTTTCCCCTTTCTTGACAAAA
AAACCACCCCCCTATGGGCCCCTTGAAAAAAAACCCCCCCCTTTTTTTCCCCCCCCCCCTTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392884] SGN-U596140 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194210 [Download][View] Facility Assigned ID: FA0AAD24DG01FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.812 Expected Error Rate: 0.0258 Quality Trim Threshold: 14.5