EST details — SGN-E393135

Search information 
Request: 393135Match: SGN-E393135
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182023Clone name: TUS-38-H21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182023 is on microarray TOM1 spot ID 1-1-4.4.10.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C88872 [cLET-9-P12] Trace: SGN-T104808 EST: SGN-E289993 Direction: 5' Facility: TIGR
Clone: SGN-C182023 [TUS-38-H21] Trace: SGN-T194708 EST: SGN-E393382 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E393135Length: 588 bp (866 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393135 [] (trimmed) TCTTTTTTTCCAACAATTTTTCTCTCTCACACACCATTTCTTTAATCAAATTTTCTGATGAATTTTCTTGTGATTGAAACTATGAATTTGTGATC
GAATTAAAAGCTGTGATTGTTAGAGTTCTGCTGAGGATTAAGTGCTTTTTTTCTCTACAAAACTTTGTAATTCAGGCAAAATGAGCTCTTTGCAA
GGGCCTGTTGTTTGTCCTCTGGTTCATGTAAAGCAAACAGGTAGACTCACTTCACCTATAGTAAAGGCTAAGATGCTGAGGAGTACTGAGTTTTG
GGGATTTAATGGGATACATAGACGGCGGATTAATGTGGTTCGTCTACCACGATCACGTATAAGCAAGTTGATCGTATGTAGTTTCAATTCATCAT
CAAATGACAGTGGTGGCATGGCCGGGAATTTTAAAGAAACTGATGCTGATTATGTGAATTCTAGCGTGGTTGAAGCTGTTGAAGTGCAAAGCGGG
AAAGATGGTTTCATGATCAAGATGAGAGATGGAAGGCATGTGAAATGCGTCCCTAACAATCCCCAGGGGTTCATGTACATAACTATGCTTCCAAA
CCCCGCATTTGTCCTAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393135] SGN-U578509 Tomato 200607 Build 2 12 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194461 [Download][View] Facility Assigned ID: FA0AAD26CD11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.945 Expected Error Rate: 0.0025 Quality Trim Threshold: 14.5