EST details — SGN-E393227

Search information 
Request: 393227Match: SGN-E393227
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182175Clone name: TUS-38-O5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182175 is on microarray TOM1 spot ID 1-1-4.3.10.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5752 [cLEC-32-O24] Trace: SGN-T29997 EST: SGN-E207784 Direction: 5' Facility: TIGR
Clone: SGN-C182175 [TUS-38-O5] Trace: SGN-T194770 EST: SGN-E393444 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E393227Length: 599 bp (862 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393227 [] (trimmed) ACAAATAATTGACCTTTTTATACCAAAACATTCAAAAAGTTAGTCACATTATTATACATGAGTACTAAATGTCAATCAAGTATATACAATCATTA
CAAATTACAGAACCATTCAGTAGGGTTCATATACATATATTTTTTTTAGCATATATCACTGTAAAAGTTTTGGGCCAGTGTTAAAGTACATCCAT
GATGTTATTGTCTCCACAAGCATATCCAAGTCCTTTGAATTCCCAAAATTAAAAATTATAAAGTCTACATTACCGAGCGTATTGCCGACTTCCTT
CGTGACGTTTTCCCATGGCGTTCCTGCTGTCAAGTTCGCCAATAGCTCGCTGCTCCTGTTAACAGCGTCCGTCATTCCTGGAGGAGCATTTGGTA
AAGCCTGCTGTAAAGGAAGCGCATGGTCTCCAGGAAGAGTGCGGATAGACATATCCAGCATTGAGCTGATGGCGGAACCTGAGCTGAGCACCTGA
GCTAGTGTTGAAGTTTCGTCGATTGTATCATCTTTGAACTTAACTAAAAGATTCCTCGAAATCCCGTAGTAGGACCTTATCAGTCTTTGAGTTTC
TTCCGGTCTTGAAGTGAAATTTTCTTTTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393227] SGN-U578897 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194553 [Download][View] Facility Assigned ID: FA0AAD26AH03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0076 Quality Trim Threshold: 14.5