Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E393230

Search information 
Request: 393230Match: SGN-E393230
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182189Clone name: TUS-38-O19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182189 is on microarray TOM1 spot ID 1-1-6.3.10.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5914 [cLEC-33-J6] Trace: SGN-T30167 EST: SGN-E206895 Direction: 5' Facility: TIGR
Clone: SGN-C182189 [TUS-38-O19] Trace: SGN-T194774 EST: SGN-E393448 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393230Length: 467 bp (867 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393230 [] (trimmed) AGCACACACACCATTTCTCTCTCTCTTCTAAGCTGAATTTTCGTATCATACAATTTACTCTTTCTTTCTTTTTTTTTTATTATTATTTTTATTAT
ATAGTTTTATAATCAGGTCGCTCTGATTAAATATATTTGAAAATTTTTATCAAATAATATTGTGGTCATGGAGAGTACCGATTCATCAACCGGCT
CTCATCATCAACCACAATTGCCACCTGGATTTCGATTTCATCCAACTGATGAAGAGCTTGTGGTTCATTATCTTAAGAAAAGAGTTGCCTCTGTT
CCTCTTCCTGTTTCTATTATTGCTGAAGTTGATCTTTACAAATTTGATCCTTGGGAACTACCTGCTAAGGCGACATTTGGAGAACAAGAATGGTA
TTTCTTCAGTCCAAGAGATAGAAAATATCCTAACGGGGCGCGCCCAAATAGGGCGGCAACTTCCGGTTATTGGAAAGGCTACCGGAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393230] SGN-U568609 Tomato 200607 Build 2 36 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194556 [Download][View] Facility Assigned ID: FA0AAD26AH10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.953 Expected Error Rate: 0.0013 Quality Trim Threshold: 14.5