EST details — SGN-E393403

Search information 
Request: 393403Match: SGN-E393403
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182153Clone name: TUS-38-N7
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182153 is on microarray TOM1 spot ID 1-1-2.2.10.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C182153 [TUS-38-N7] Trace: SGN-T194488 EST: SGN-E393162 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E393403Length: 515 bp (848 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393403 [] (trimmed) AAAACACCAAAGTAAAATATTGTCATACCATAGCATAATTAACAAACATTACATGATGGCTTTTATTTCATGATAATAATTTTTTCTTACAATAA
GCTCCAAAAAGCAGCAAGAATATTACTACTAATACATCTTGCCACTAATTAGTACAAGGTGATAACTATATATTACTATATTCATTCACCTTTGT
ATCTAGGAACAACACTTCCGGCCACCACCACCACGTCCACCGCGGCCACCGCCACCGCCACGTCCACCACCGCCGGAGTATCTACCACCACCACG
GCCGCCACCACCACCACCAGGGTATCTACCACCACCGCCACGATATCCACCACCACCTGGGTATCCGCCACCAGGGTATCCACCACCACCACCAC
TACGTCCACCACCACCAGGGTATCCACCGCCACCACCGGGGTACCCGCCATATTCGGCTTCATGTACTTCATTTTTGTTACTGGATTTCTTGGAA
TCCTCTTCAGAAGTAGTAGTAGAAGTCTCAGCCAACTCCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393403] SGN-U578924 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194729 [Download][View] Facility Assigned ID: FA0AAD26CG04FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.957 Expected Error Rate: 0.0004 Quality Trim Threshold: 12.5