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EST details — SGN-E393512

Search information 
Request: 393512Match: SGN-E393512
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182236Clone name: TUS-39-A18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182236 is on microarray TOM1 spot ID 1-1-7.1.8.21 [Order] [Tomato Microarray Database]
See unigene SGN-U578195 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C16944 [cLED-18-B17] Trace: SGN-T53127 EST: SGN-E237824 Direction: 5' Facility: TIGR
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T194836 EST: SGN-E393510 Direction: 3' Facility: INRA
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T194836 EST: SGN-E399500 Direction: 3' Facility: INRA
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T194837 EST: SGN-E393511 Direction: 3' Facility: INRA
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T194838 EST: SGN-E398807 Direction: 5' Facility: INRA
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T199389 EST: SGN-E398063 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393512Length: 348 bp (904 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393512 [] (trimmed) CTGTAAATTATTTGTGCATATATTTGCTGAGCTTTCTTAGTTTACATAGAATCCAGGTAAGCTCTACTCGGTTTCCAGGAACCCATACATTGTAT
ACTCTACTAGATTTGACATTGCTAGATGACATCTAATCCTAAGGTAGGGCGAATAACACTACATATATTGATCTCCCTCTTCCCTTTCTTGATGG
GACGTCGGTGAAATAACCTTCAAATGAAAAAGAAAAAAAAAACGAAATAAAGAAGATTACAAGTCTTGCAAAGGGAAGGATTGAATATTAACTGA
CTCATGTGACCAAATCTTTGCNTGAGGCAGTAGCGCTCGGCCCCTGTGGCATTGTTTATTTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393512] SGN-U578195 Tomato 200607 Build 2 342 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194838 [Download][View] Facility Assigned ID: FA0AAD27BA09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.976 Expected Error Rate: 0.0164 Quality Trim Threshold: 14.5