EST details — SGN-E393541
| Search information |
| Request: 393541 | Match: SGN-E393541 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182364 | Clone name: TUS-39-G2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182364 is on microarray TOM1 spot ID 1-1-7.3.8.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C68691 [cLEN-7-G5] | Trace: SGN-T88407 | EST: SGN-E273711 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C182364 [TUS-39-G2] | Trace: SGN-T194864 | EST: SGN-E393538 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182364 [TUS-39-G2] | Trace: SGN-T194864 | EST: SGN-E398816 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182364 [TUS-39-G2] | Trace: SGN-T194865 | EST: SGN-E393539 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182364 [TUS-39-G2] | Trace: SGN-T194866 | EST: SGN-E393540 | Direction: 5' | Facility: INRA |
| Clone: SGN-C182364 [TUS-39-G2] | Trace: SGN-T194866 | EST: SGN-E398817 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393541 | Length: 728 bp (830 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393541 [] (trimmed)
TTTTAGCTCAGTCTTCTCCTCACAAGATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGA
AAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGA
AGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTA
CCCCCCAGACAAAGAAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAG
TTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGA
AACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAGGGTGCTCTCAA
CCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTCTATTTGCTCCAAGAAAAACTCTAAAGACT
TTTGATAAATAATGATTGGGTTACCACTTCCCTATCAGTCTCGAGTGGTACACAACTATTTTT
AAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGA
AGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTA
CCCCCCAGACAAAGAAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAG
TTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGA
AACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAGGGTGCTCTCAA
CCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTCTATTTGCTCCAAGAAAAACTCTAAAGACT
TTTGATAAATAATGATTGGGTTACCACTTCCCTATCAGTCTCGAGTGGTACACAACTATTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393541] | SGN-U567984 | Tomato 200607 | Build 2 | 36 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T194867 [Download][View] | Facility Assigned ID: FA0AAD27BD01RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.970 | Expected Error Rate: 0.0033 | Quality Trim Threshold: 14.5 |
Working
