EST details — SGN-E393559

Search information 
Request: 393559Match: SGN-E393559
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182434Clone name: TUS-39-I24
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182434 is on microarray TOM1 spot ID 1-1-1.1.7.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C83282 [cLET-23-P9] Trace: SGN-T108290 EST: SGN-E295565 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393559Length: 495 bp (874 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E393559 [] (trimmed) GTATAAATTCGATAGTTACATTTTCAAGATACTCCAGTACTCACTTTACTAGCATTGAATTAGGTTAGTTACAAGACAAACTGTGCCATTTGGAG
TGTACAGAACAGTGAAGAAATCTCAAATTCACTAGTCATGATTTAATGTTCTTTGTCACACCAATGTCCTTTTGTCATTTACAGACTTCTTTGAT
AGCGTTGAGCATTCACAGACATCCCACCATCATCTCCACGGAACTGTCTATACCTGAAGAGATCATCGCTACCTTTGTTCAATCTGCCTCTGGGA
GGCATAGGTAGCAGAGGTAATGCATTTGGATGGTGACAGATTCCGAGTTTCACTACAAACGTGACAGTGGTTCCCTTTCCAGGGCCCTCACTCTC
AATCCAAATGTTACCTTTCATAAGTTGAATAAATCGTCTGCAAATGGCAAGCCCAAAACCTTCCCCTCCAATACTTGCGGGGGGGGGGGGGAGCC
GTGACTCTGCAAATTTGGTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393559] SGN-U580538 Tomato 200607 Build 2 122 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194885 [Download][View] Facility Assigned ID: FA0AAD27BE12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0063 Quality Trim Threshold: 14.5