EST details — SGN-E393562
| Search information |
| Request: 393562 | Match: SGN-E393562 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182476 | Clone name: TUS-39-K18 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182476 is on microarray TOM1 spot ID 1-1-7.3.7.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C182476 [TUS-39-K18] | Trace: SGN-T194888 | EST: SGN-E398820 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182476 [TUS-39-K18] | Trace: SGN-T194889 | EST: SGN-E393563 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182476 [TUS-39-K18] | Trace: SGN-T194890 | EST: SGN-E393564 | Direction: 5' | Facility: INRA |
| Clone: SGN-C182476 [TUS-39-K18] | Trace: SGN-T200131 | EST: SGN-E398821 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393562 | Length: 637 bp (857 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393562 [] (trimmed)
GGTCTTCTCTCCGATAACCGCAACTTTCTCAGAGTCTAACGGAATTTCTCTTTGAAACCCTAATAACAGTTACCTTAGTTGAGTTCTGTATACAA
TGGAAGAGGAAGTCCAAGTGGATGAGAATTTTCCCTTATTCTCCCGGAAAACTAAACCGGCCACAAAAAAACTCGTTCCTGCTCCAACCTCCATT
GAAGAAACCCCAAAGCAGCTTGACAAGGAGACTAACTCTGGTCCAACCCCTAGTTATATCACCTTCTCTGACTTAGGCCTCGCCGGGTGGGCTGT
ACAGACCTGTAATGAGCTGGGCATGAAGAAACCCACTCCTGTACAATATCACTGTATACCCAGAATACTCTCCGGACAGGATGTGTTAGGTTTAG
CTCAGACTGGTAGTGGAAAAACAGCTGCATTTGCATTGCCTATTCTTCATCGTTTAGCTGAAGATCCTTATGGGGTGTCCTGTCTTGTGGTTACT
CCGACACGGGAGCTTGCGTTTCAGCTTGCCGAGCAGTTTCGGGCCCTGGGATCCTGCTTGAATTTGCGGTGTGCTGTGATTGTGGGAGGAATGGA
TATGATAACCCAGACTAAGACTCTGGATGCAAAGACCTCATGTGGTGATAGCAACTCCCGGAAGGAT
TGGAAGAGGAAGTCCAAGTGGATGAGAATTTTCCCTTATTCTCCCGGAAAACTAAACCGGCCACAAAAAAACTCGTTCCTGCTCCAACCTCCATT
GAAGAAACCCCAAAGCAGCTTGACAAGGAGACTAACTCTGGTCCAACCCCTAGTTATATCACCTTCTCTGACTTAGGCCTCGCCGGGTGGGCTGT
ACAGACCTGTAATGAGCTGGGCATGAAGAAACCCACTCCTGTACAATATCACTGTATACCCAGAATACTCTCCGGACAGGATGTGTTAGGTTTAG
CTCAGACTGGTAGTGGAAAAACAGCTGCATTTGCATTGCCTATTCTTCATCGTTTAGCTGAAGATCCTTATGGGGTGTCCTGTCTTGTGGTTACT
CCGACACGGGAGCTTGCGTTTCAGCTTGCCGAGCAGTTTCGGGCCCTGGGATCCTGCTTGAATTTGCGGTGTGCTGTGATTGTGGGAGGAATGGA
TATGATAACCCAGACTAAGACTCTGGATGCAAAGACCTCATGTGGTGATAGCAACTCCCGGAAGGAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393562] | SGN-U584582 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T194888 [Download][View] | Facility Assigned ID: FA0AAD27BF09FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.983 | Expected Error Rate: 0.0044 | Quality Trim Threshold: 14.5 |
Working
