EST details — SGN-E393595

Search information 
Request: 393595Match: SGN-E393595
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183467Clone name: TUS-42-E1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183467 is on microarray TOM1 spot ID 1-1-8.1.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C17613 [cLED-1-H4] Trace: SGN-T48529 EST: SGN-E227017 Direction: 5' Facility: TIGR
Clone: SGN-C183467 [TUS-42-E1] Trace: SGN-T194922 EST: SGN-E393596 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E393595Length: 607 bp (847 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393595 [] (trimmed) GTTTTTAAAGCTAATTTATAAAACAAACAATGGGCACTTCCTCTGTTTTTCTACTATTCCTTCTTTCTTTTCTTCTCCTTCTCCCGTCCCTCCTT
GCCTCCTCTAATCCTCAACAAGTTGTCGATGAAGTACACAGGTACGTGCATTTTTAATTTTATTTTAATTCAACATTGCATATTTGAAAAGGGAC
AGAGTCAGATAGGAACAAGGAGTTCATTCGTATTAAAATAATTGCATATGGTAATACTCATGTGTACATTATTATTATAATAATGCAGGAGTATA
AATGGTTCAAGGAGGAATTTAGGGTATTTATCGTGTGGTACCGGAAATCCAATCGACGATTGTTGGCGTTGTGATCCGAATTGGGAGAAAAACCG
TCAGCGGTTAGCTGACTGTGCAATTGGATTTGGGAAAAACGCTATTGGTGGTAGAGACGGTAAAATCTACGTGGTGACCGATTCGGGTGACGACA
ATGCCGTCACTCCCAAAGCCGGGGACTCTCCCGGCACGCAGTGATTCAAACTGAGCCCATGTGGATTATTTTCGCGAGGGATATGGTTATACAGT
TGAAAGAGGAATTAATTATGAATTCCTTTAAAAACAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393595] SGN-U585247 Tomato 200607 Build 2 21 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194921 [Download][View] Facility Assigned ID: FA0AAD30AC01FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0099 Quality Trim Threshold: 14.5