EST details — SGN-E393642
| Search information |
| Request: 393642 | Match: SGN-E393642 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183719 | Clone name: TUS-42-O13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183719 is on microarray TOM1 spot ID 1-1-4.3.1.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C32414 [cLEG-1-G11] | Trace: SGN-T64368 | EST: SGN-E248305 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183719 [TUS-42-O13] | Trace: SGN-T194968 | EST: SGN-E399203 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183719 [TUS-42-O13] | Trace: SGN-T194969 | EST: SGN-E393643 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183719 [TUS-42-O13] | Trace: SGN-T195506 | EST: SGN-E394180 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183719 [TUS-42-O13] | Trace: SGN-T195507 | EST: SGN-E394181 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183719 [TUS-42-O13] | Trace: SGN-T195507 | EST: SGN-E399204 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393642 | Length: 611 bp (842 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393642 [] (trimmed)
CGTAAGAATAGTCACTCAAAAAAGCACCCATCAACCAAAAAAAATCCCCAATAGCCGGCGGCGCACGTTAGTGAGATCGGAGTAAACGATGGCCG
ATCACGCCGGCGAGCACGAACCAGTCGTTGAATCCGTCATGGAAAAGATCAACGAAAAGTTGCACGACCACAATTCTTCCTCATCCGATTCTGAA
GATGAGAAGGAGAAAATATCGTCGGTCGATGCCGTCAAGGCAAAGATCTATCGTCTCTTTGGCAGGGAAAGGCCCGTCCATAAGGTTCTCGGCGG
TGGAAAACCTGCGGACATTTTTCTGTGGAGGGACAAGAAAATTACTGCCGGTGTGCTTGGGTTTGCCACTTCACTTTGGGTGCTTTTTGAGTTGC
TTCAGTACCATTTGCTTACACTTGTTTGCCATATACTGATCCTTGCATTGGCAGTCCTTTTCCTTTGGTCCAATGCATCTACCTTCATCAACAAG
TCTCCACCCCAAATTCCCGATGTCATTCTGCCTGAGGATATTGTCCTGGGTGTTGCTGCTGCACTCCTGATTGAAATAAACAGAGCCTCTTGAAG
TTTTTCGGGATATTGCCTCTGGGAAAAAGTTGAAGAAATTC
ATCACGCCGGCGAGCACGAACCAGTCGTTGAATCCGTCATGGAAAAGATCAACGAAAAGTTGCACGACCACAATTCTTCCTCATCCGATTCTGAA
GATGAGAAGGAGAAAATATCGTCGGTCGATGCCGTCAAGGCAAAGATCTATCGTCTCTTTGGCAGGGAAAGGCCCGTCCATAAGGTTCTCGGCGG
TGGAAAACCTGCGGACATTTTTCTGTGGAGGGACAAGAAAATTACTGCCGGTGTGCTTGGGTTTGCCACTTCACTTTGGGTGCTTTTTGAGTTGC
TTCAGTACCATTTGCTTACACTTGTTTGCCATATACTGATCCTTGCATTGGCAGTCCTTTTCCTTTGGTCCAATGCATCTACCTTCATCAACAAG
TCTCCACCCCAAATTCCCGATGTCATTCTGCCTGAGGATATTGTCCTGGGTGTTGCTGCTGCACTCCTGATTGAAATAAACAGAGCCTCTTGAAG
TTTTTCGGGATATTGCCTCTGGGAAAAAGTTGAAGAAATTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393642] | SGN-U586311 | Tomato 200607 | Build 2 | 114 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T194968 [Download][View] | Facility Assigned ID: FA0AAD30AH07FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.989 | Expected Error Rate: 0.0074 | Quality Trim Threshold: 14.5 |
Working
