EST details — SGN-E393657
| Search information |
| Request: 393657 | Match: SGN-E393657 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183458 | Clone name: TUS-42-D16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183458 is on microarray TOM1 spot ID 1-1-1.4.1.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183458 [TUS-42-D16] | Trace: SGN-T194982 | EST: SGN-E393656 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183458 [TUS-42-D16] | Trace: SGN-T195515 | EST: SGN-E394189 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183458 [TUS-42-D16] | Trace: SGN-T195515 | EST: SGN-E399447 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393657 | Length: 485 bp (841 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393657 [] (trimmed)
TTTTGATGTATCAGTTCTTGAGGTTGGAGATGGAGTATTTGAGGTACTTTCTACCTCAGGGGACACACACTTGGGAGGTGATGATTTTGATAACA
GAATTGTGGACTGGCTTGCTGATACTTTTAGGAAAGAAGAACGAATAGAGCTTCTTAAAGACAAACCAGCGCTTCAACGTCTTACTGAAGCTGCT
GAGAAGGCAAAGATAGAATTGTCAACCTTGACTCAAACTAATATCACTTTGCCATTCATCACTGCTACTGCAGATGGTCCGAAACATATTGACAC
AACATTTACAAGGGCCAAGTTTGAGGAGTTATGCTCTGACTTATTGGACAGGCTTAAAACACCAGTTGAAACTGCCTTGAAGGATGCCAGCCTTT
CCTTCAAAGATATTGATGAAGTACTTCTTGTTGGTGGATCAACACGAATACCGGCTGTTCAAAACCTTGTCCGCAAAATCGACTGGTAAAGAACC
TAATGTTTCT
GAATTGTGGACTGGCTTGCTGATACTTTTAGGAAAGAAGAACGAATAGAGCTTCTTAAAGACAAACCAGCGCTTCAACGTCTTACTGAAGCTGCT
GAGAAGGCAAAGATAGAATTGTCAACCTTGACTCAAACTAATATCACTTTGCCATTCATCACTGCTACTGCAGATGGTCCGAAACATATTGACAC
AACATTTACAAGGGCCAAGTTTGAGGAGTTATGCTCTGACTTATTGGACAGGCTTAAAACACCAGTTGAAACTGCCTTGAAGGATGCCAGCCTTT
CCTTCAAAGATATTGATGAAGTACTTCTTGTTGGTGGATCAACACGAATACCGGCTGTTCAAAACCTTGTCCGCAAAATCGACTGGTAAAGAACC
TAATGTTTCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393657] | SGN-U584210 | Tomato 200607 | Build 2 | 54 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T194983 [Download][View] | Facility Assigned ID: FA0AAD30DB08RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.959 | Expected Error Rate: 0.0169 | Quality Trim Threshold: 14.5 |
Working
