EST details — SGN-E393704

Search information 
Request: 393704Match: SGN-E393704
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183520Clone name: TUS-42-G6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183520 is on microarray TOM1 spot ID 1-1-3.3.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4562 [cLEC-27-O13] Trace: SGN-T28826 EST: SGN-E204092 Direction: 5' Facility: TIGR
Clone: SGN-C183520 [TUS-42-G6] Trace: SGN-T195031 EST: SGN-E393705 Direction: 5' Facility: INRA
Clone: SGN-C183520 [TUS-42-G6] Trace: SGN-T196022 EST: SGN-E394696 Direction: 5' Facility: INRA
Clone: SGN-C183520 [TUS-42-G6] Trace: SGN-T196022 EST: SGN-E399257 Direction: 5' Facility: INRA
Clone: SGN-C183520 [TUS-42-G6] Trace: SGN-T200294 EST: SGN-E399256 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393704Length: 385 bp (870 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393704 [] (trimmed) ATGAGTAATTACCATATATAGCTCTTTAGTCATGTACTAATTTGGTGAATATTAAAGATGTAGTAGACATGATCATGACTCGGTGCATGTCAGAT
CCTCAAAAAGTAGTGTATTTTTAGAGGAATCAACACAGGTACGATAACATTCTTTGGAGAGTCCGAGCAACATAGCTTAGTATCATTTGAAACAC
GTTGATTTTCGAGCCAGCAGAGTTTCTACGAACTTCTCTGCATAATCCAGGCCACACTGTGTCTTCACAACTGGTAATATTGCAGGGACATCTAG
ATAAAATTCTGAAGCAGACTCGTCGAGCTTGTCCCAACGTTTGAGCTGTTCACGTGCTGCTCTTATGGCTGCTCTTGTTGCACAATGGACCGAAG
CTGCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393704] SGN-U582239 Tomato 200607 Build 2 38 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195030 [Download][View] Facility Assigned ID: FA0AAD30BD03FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.974 Expected Error Rate: 0.0009 Quality Trim Threshold: 12.5