EST details — SGN-E393733

Search information 
Request: 393733Match: SGN-E393733
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183682Clone name: TUS-42-M24
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183682 is on microarray TOM1 spot ID 1-1-1.1.1.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183682 [TUS-42-M24] Trace: SGN-T196052 EST: SGN-E394726 Direction: 5' Facility: INRA
Clone: SGN-C183682 [TUS-42-M24] Trace: SGN-T196052 EST: SGN-E399316 Direction: 5' Facility: INRA
Clone: SGN-C183682 [TUS-42-M24] Trace: SGN-T200464 EST: SGN-E399584 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393733Length: 490 bp (811 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393733 [] (trimmed) GTGGAGCTAGGTAGGACCTTAGACCTGGCAGAATGTGCTTTGTGGATGCCATGCCAAGGAGGCCTGACTTTGCAACTTTCCCATAATTTAAACAA
TCTAATACCTCTGGGATCTACTGTGCCAATTAATCTTCCTATTATCAATGAAATTTTTAGTAGCCCTGAAGCAATACAAATTCCACATACAAATC
CTTTGGCAAGGATGAGGAATACTGTTGGTAGATATATTCCACCAGAAGTAGTTGCTGTTCGTGTACCGCTTTTACACCTCTCAAATTTTACTAAT
GACTGGGCTGAACTGTCTACTAGAAGTTATGCGGTTATGGTTCTGGTTCTCCCGATGAATGGCTTAAGAAAGTGGCGTGAACATGAGTTAGAACT
TGTGCAAGTTGTCGCAGATCAGGTTGCTGTCGCTCTTTCACATGCTGCAATTTTAGAAGATTCCATGCGAGCCCATGATCAGCTCATGGAACAAA
ATATTGCTTTGGATG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393733] SGN-U580538 Tomato 200607 Build 2 122 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195059 [Download][View] Facility Assigned ID: FA0AAD30BG12RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.971 Expected Error Rate: 0.0034 Quality Trim Threshold: 14.5