EST details — SGN-E393739
| Search information |
| Request: 393739 | Match: SGN-E393739 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183728 | Clone name: TUS-42-O22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183728 is on microarray TOM1 spot ID 1-1-3.3.1.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183728 [TUS-42-O22] | Trace: SGN-T196059 | EST: SGN-E394733 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183728 [TUS-42-O22] | Trace: SGN-T196059 | EST: SGN-E399328 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183728 [TUS-42-O22] | Trace: SGN-T200466 | EST: SGN-E399586 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393739 | Length: 616 bp (838 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393739 [] (trimmed)
GTATAAATTCGATAGTTACATTTTCAAGATACTCCAGTACTCACTTTACGAGCATTGAATTAGGTTAGTTACAAGACAAACTGTGCCATTTGGAG
TGTACAGAACAGTGAAGAAATCTCAAATTCACTAGTCATGATTTAATGTTCTTTGTCACACCAATGTCCTTTTGTCATTTACAGACTTCTTTGAT
AGCGTTGAGCATTCACAGACATCCCACCATCATCTCCACGGAACTGTCTATACCTGAAGAGATCATCGCTACCTTTGTTCAATCTGCCTCTGGGA
GGCATAGGTAGCAGAGGTAATGCATTTGGATGGTGACAGATTCCGAGTTTCACTACAAACGTGACAGTGGTTCCCTTTCCAGGGCCCTCACTCTC
AATCCAAATGTTACCTTTCATAAGTTGAATAAATCGTCTGCAAATGGCAAGCCCTAGACCTTCCCCTCCAGTACTTCGATTTGACGTAGGCCGTG
ACTCTGCAAATTTGGTGAATACTAGTGGTATATCTTGTGGGCTAATTCCACACCCAGTATCTCTAACCCTGGACACGCAAATAAAACTGGCCATC
ACTTGGCATAAGGAAACTTTCCGGAGGAAGACAATCCTCTCCCATA
TGTACAGAACAGTGAAGAAATCTCAAATTCACTAGTCATGATTTAATGTTCTTTGTCACACCAATGTCCTTTTGTCATTTACAGACTTCTTTGAT
AGCGTTGAGCATTCACAGACATCCCACCATCATCTCCACGGAACTGTCTATACCTGAAGAGATCATCGCTACCTTTGTTCAATCTGCCTCTGGGA
GGCATAGGTAGCAGAGGTAATGCATTTGGATGGTGACAGATTCCGAGTTTCACTACAAACGTGACAGTGGTTCCCTTTCCAGGGCCCTCACTCTC
AATCCAAATGTTACCTTTCATAAGTTGAATAAATCGTCTGCAAATGGCAAGCCCTAGACCTTCCCCTCCAGTACTTCGATTTGACGTAGGCCGTG
ACTCTGCAAATTTGGTGAATACTAGTGGTATATCTTGTGGGCTAATTCCACACCCAGTATCTCTAACCCTGGACACGCAAATAAAACTGGCCATC
ACTTGGCATAAGGAAACTTTCCGGAGGAAGACAATCCTCTCCCATA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393739] | SGN-U580538 | Tomato 200607 | Build 2 | 122 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195065 [Download][View] | Facility Assigned ID: FA0AAD30BH11FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.976 | Expected Error Rate: 0.0020 | Quality Trim Threshold: 14.5 |
Working
