EST details — SGN-E393775
| Search information |
| Request: 393775 | Match: SGN-E393775 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172675 | Clone name: TUS-14-C9 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172675 is on microarray TOM1 spot ID 1-1-8.3.20.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10788 [cLEC-6-E2] | Trace: SGN-T24115 | EST: SGN-E202454 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172675 [TUS-14-C9] | Trace: SGN-T195554 | EST: SGN-E394228 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172675 [TUS-14-C9] | Trace: SGN-T195554 | EST: SGN-E398903 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172675 [TUS-14-C9] | Trace: SGN-T195555 | EST: SGN-E394229 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172675 [TUS-14-C9] | Trace: SGN-T200166 | EST: SGN-E398904 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393775 | Length: 691 bp (863 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393775 [] (trimmed)
AGAGAATCACACCGAATTTATTTCATTCTTTGAACACATTACATAGAGAAAAGAAATCCAAATAATTAATATAAATATACTTATAAGTGAAAAAA
TCAATTTATAGCTCCACAAACCGTTCTTATGATTCCATTTTGACCAGTTAGAGGACTAATATCTCCCATTTTAATCATGGCTGCAGCAAAATCAG
AGGCAAATGCTCGAGGGCTATTGCTATATTCTAAAACAATATCATCGGTAGATCCTCCACTCAAAAGAACTTGATCCGATTGAAGAAGGCCTTTT
CTTTGCCTCAAATTCTTGAAGTAGTTGTTATCCAATTGATTAGGTGTTACCAAATCAAGTGGAGCTAGGTTTCCATTTTGATCTTCTTGAGGACA
TTGTCGTCTTCTAGTGCTAGCAAATCCAGCATCGATGTCTGTTCCATTGCTATAAATTCTATCACGGAAAAGGAAAAATTGTGCTTGTCCAATTG
AATGTGATCCTGATAAAGCAACCATATCCCTTGTGCTAAGGCCTTTGTTGGCAAAGCCAGAAATAAGCCTACTAAGAGGATCAAAAGGACCAGGA
AGATCAGTTTCCGCAACAGTATGACTTGCAGTGGTTGAGTCTCTTCTTCCGAGTTTCACTGTCCATGATGGACCGCCAACGAGACTTGATGCATC
TCTACCACCAACTGCAAGTATGTCAA
TCAATTTATAGCTCCACAAACCGTTCTTATGATTCCATTTTGACCAGTTAGAGGACTAATATCTCCCATTTTAATCATGGCTGCAGCAAAATCAG
AGGCAAATGCTCGAGGGCTATTGCTATATTCTAAAACAATATCATCGGTAGATCCTCCACTCAAAAGAACTTGATCCGATTGAAGAAGGCCTTTT
CTTTGCCTCAAATTCTTGAAGTAGTTGTTATCCAATTGATTAGGTGTTACCAAATCAAGTGGAGCTAGGTTTCCATTTTGATCTTCTTGAGGACA
TTGTCGTCTTCTAGTGCTAGCAAATCCAGCATCGATGTCTGTTCCATTGCTATAAATTCTATCACGGAAAAGGAAAAATTGTGCTTGTCCAATTG
AATGTGATCCTGATAAAGCAACCATATCCCTTGTGCTAAGGCCTTTGTTGGCAAAGCCAGAAATAAGCCTACTAAGAGGATCAAAAGGACCAGGA
AGATCAGTTTCCGCAACAGTATGACTTGCAGTGGTTGAGTCTCTTCTTCCGAGTTTCACTGTCCATGATGGACCGCCAACGAGACTTGATGCATC
TCTACCACCAACTGCAAGTATGTCAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393775] | SGN-U579084 | Tomato 200607 | Build 2 | 30 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195101 [Download][View] | Facility Assigned ID: FA0AAD2AB05FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.959 | Expected Error Rate: 0.0048 | Quality Trim Threshold: 14.5 |
Working
