EST details — SGN-E393783
| Search information |
| Request: 393783 | Match: SGN-E393783 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172719 | Clone name: TUS-14-E5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172719 is on microarray TOM1 spot ID 1-1-4.1.20.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10849 [cLEC-6-H12] | Trace: SGN-T24217 | EST: SGN-E202556 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172719 [TUS-14-E5] | Trace: SGN-T195564 | EST: SGN-E394238 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172719 [TUS-14-E5] | Trace: SGN-T195564 | EST: SGN-E398918 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172719 [TUS-14-E5] | Trace: SGN-T195565 | EST: SGN-E394239 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172719 [TUS-14-E5] | Trace: SGN-T200171 | EST: SGN-E398919 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393783 | Length: 692 bp (851 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393783 [] (trimmed)
GAATGGAAAGCTCTATATTGATTAGGGTGTGTGTATAAGACTTTCAACAGTACCCTGATGCATATATACAATTGGATCTACATGACAAAGAAAAA
TGAAGGATGCCGATCAATTACTCAAGAAAATTACAAAGCAATATCTCATTACAAATGTAGACCGTAACACAACTTCTATAACTGATTGTGAAAAA
GTGAGCCTTTGTGCTATACAAAGTCAAATCCTGATTTTGGGAGCATTGCATTACAATCTGGAGTTGGTATAGTTTCTTCCAGATTAAGTCAATCC
TTCAATAGAGTGTTCTTGTTCAAACCCAATGTAAGAATCCGATACTAGAATGAGCTTTATCCCCTGGAAATTGGTCAGAGTGGATGGCAAATCCA
TGTGTGTCTGCAAACGACCAGAGAAAGACACTCTCTTCAGAGCATACAGTTCACTTGCGGAAGTATTACAAAGGACTAACCACCAAGCTTCATCT
TTTACCTTTGGATATCGTGGGATAAAAGCTTTTGCTGTTCTTCGCTGAGTATTTGCATCTTCCAATCTAATGTTCAAGGTTAAAATCTTTCCACC
ATTAGATTCCTTTGGCTGAATTTTAAGTCGAACTTGAATCCGAGGGAAATGCCGCATATCCTGATACAGTTTCGAGGCAGCTGAACTTCCAGTGA
TAGCCCGTAATGATTCTGAAGGGCAAT
TGAAGGATGCCGATCAATTACTCAAGAAAATTACAAAGCAATATCTCATTACAAATGTAGACCGTAACACAACTTCTATAACTGATTGTGAAAAA
GTGAGCCTTTGTGCTATACAAAGTCAAATCCTGATTTTGGGAGCATTGCATTACAATCTGGAGTTGGTATAGTTTCTTCCAGATTAAGTCAATCC
TTCAATAGAGTGTTCTTGTTCAAACCCAATGTAAGAATCCGATACTAGAATGAGCTTTATCCCCTGGAAATTGGTCAGAGTGGATGGCAAATCCA
TGTGTGTCTGCAAACGACCAGAGAAAGACACTCTCTTCAGAGCATACAGTTCACTTGCGGAAGTATTACAAAGGACTAACCACCAAGCTTCATCT
TTTACCTTTGGATATCGTGGGATAAAAGCTTTTGCTGTTCTTCGCTGAGTATTTGCATCTTCCAATCTAATGTTCAAGGTTAAAATCTTTCCACC
ATTAGATTCCTTTGGCTGAATTTTAAGTCGAACTTGAATCCGAGGGAAATGCCGCATATCCTGATACAGTTTCGAGGCAGCTGAACTTCCAGTGA
TAGCCCGTAATGATTCTGAAGGGCAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393783] | SGN-U562830 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195109 [Download][View] | Facility Assigned ID: FA0AAD2AC03FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0029 | Quality Trim Threshold: 14.5 |
Working
