EST details — SGN-E393805
| Search information |
| Request: 393805 | Match: SGN-E393805 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172859 | Clone name: TUS-14-K1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172859 is on microarray TOM1 spot ID 1-1-8.3.20.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14149 [cLEC-7-A19] | Trace: SGN-T25201 | EST: SGN-E201919 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172859 [TUS-14-K1] | Trace: SGN-T195130 | EST: SGN-E393804 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172859 [TUS-14-K1] | Trace: SGN-T195130 | EST: SGN-E398954 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172859 [TUS-14-K1] | Trace: SGN-T195316 | EST: SGN-E393990 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172859 [TUS-14-K1] | Trace: SGN-T195587 | EST: SGN-E394261 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172859 [TUS-14-K1] | Trace: SGN-T195587 | EST: SGN-E398955 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393805 | Length: 720 bp (825 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393805 [] (trimmed)
AGTACAACTTGGAGTTTCCTTTTATTATTATAGTAACATTTTCTTACAAACAAATAGCTAGAGACAATTGGTACATACATACTCACCATAATTAG
TGCTTAGCTCTTTTGCAGTAAAAAAAAAAATAGATATTTTTCTTCTATGCACACAATACCGTAAATGCTATTTATACTATTAAATTGAGCAGTAA
AAGCTCACAACTGCCGCCCCCTAAACGTTAATAACCACCCAAAAAAGAGTAGGCCAAATCAATTCTTTTTACTTCCACAATTGAATGACCAATTT
TACAATGGACAAAAAGTGCCAAACTGCGCTTTTCCCCAAATATTTTGGTGAGTAAAACCCTCAAATTTAAGGCAAAACTCTTAGAATAATATATT
AGCAAGTAGTATACTTTGAAAATTCTGATTTTTTTTTCTTAAAGAATATGTTGCGTTTTAACGGAATTGTCCTCCAGAAAATGTCTGACCAAATG
ACCAAGAACTAGGAGCTGCATTGTATGAAACAACAGTGCGACCATCGCCTGTAGTGACCTTAAAGGACAAGCTTTGGCCGTTAAGGTAAGCGTTA
TTCTGCCAATTTTGGCCCCAATTTCTTGACATTGGTTGCCATTGAGTTCTTGAACCCTTTATGTATACTGAATGTACATCCCCTGAACCTCCAAC
ATTTGTTACAAGAACCAAGTTGAAGTAAGAGTGGCCATTGATTGTAAATCTAATT
TGCTTAGCTCTTTTGCAGTAAAAAAAAAAATAGATATTTTTCTTCTATGCACACAATACCGTAAATGCTATTTATACTATTAAATTGAGCAGTAA
AAGCTCACAACTGCCGCCCCCTAAACGTTAATAACCACCCAAAAAAGAGTAGGCCAAATCAATTCTTTTTACTTCCACAATTGAATGACCAATTT
TACAATGGACAAAAAGTGCCAAACTGCGCTTTTCCCCAAATATTTTGGTGAGTAAAACCCTCAAATTTAAGGCAAAACTCTTAGAATAATATATT
AGCAAGTAGTATACTTTGAAAATTCTGATTTTTTTTTCTTAAAGAATATGTTGCGTTTTAACGGAATTGTCCTCCAGAAAATGTCTGACCAAATG
ACCAAGAACTAGGAGCTGCATTGTATGAAACAACAGTGCGACCATCGCCTGTAGTGACCTTAAAGGACAAGCTTTGGCCGTTAAGGTAAGCGTTA
TTCTGCCAATTTTGGCCCCAATTTCTTGACATTGGTTGCCATTGAGTTCTTGAACCCTTTATGTATACTGAATGTACATCCCCTGAACCTCCAAC
ATTTGTTACAAGAACCAAGTTGAAGTAAGAGTGGCCATTGATTGTAAATCTAATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393805] | SGN-U581279 | Tomato 200607 | Build 2 | 47 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195131 [Download][View] | Facility Assigned ID: FA0AAD2AF01FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.940 | Expected Error Rate: 0.0008 | Quality Trim Threshold: 14.5 |
Working
