EST details — SGN-E393817
| Search information |
| Request: 393817 | Match: SGN-E393817 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172913 | Clone name: TUS-14-M7 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172913 is on microarray TOM1 spot ID 1-1-2.1.20.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14273 [cLEC-7-G16] | Trace: SGN-T25425 | EST: SGN-E202143 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172913 [TUS-14-M7] | Trace: SGN-T195597 | EST: SGN-E394271 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172913 [TUS-14-M7] | Trace: SGN-T195597 | EST: SGN-E399528 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172913 [TUS-14-M7] | Trace: SGN-T195598 | EST: SGN-E394272 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172913 [TUS-14-M7] | Trace: SGN-T200191 | EST: SGN-E398976 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393817 | Length: 687 bp (853 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393817 [] (trimmed)
ACAGCATATGTCATCCCGAGTATAATAGTATTCACTTAGGTAAAATGGATGTCACTGGTCTGATCCAGCAACATGAAACTAAATACAGTATGTAA
TAAATCCCACACACATAAAAGTTCCAAGGCAATACCATTTTGCCACATACTAAAAAGCTTTAAACATTTCCAAACACTTTGTGTCTCCTTAGTTT
CTAAATTTCAAACTTCAAGATTGAGTGTCCTGTCCGCGAACAACTTCAAATGGCATCATACACCAAAGAACCATCACGACTGATGGCCCTTTCCA
AACCAATCATTTCTTGTAATCCTCTCATAAAACATCATTTAAGTATGATCCATTTAAAGCACTTCTGGAAACGAATGGAGGAAGGTTATTAAACA
GAAAATGATCTTTCTGTTCCACATAATCAAAGACCCCCGACACAAGGGTCTAAATCTGCTTCATCTGCAGATGCAGCAGCACAAGAAACTCTTGG
GAATCTAAAAACCCCAGGGTTTGTTGACAGCTCACGCTTGCTAATATCAGGTAAACTGAATCGTCTAACAACCTTAACTGCTTCCCCAACAATGT
ATACTTTAAACAGAATTCCTCCGTGGTTGATAAATTCCTGTAGCACAAGTGGGGGTTCTAGCATCTGAAGAGAGAATTTGTCATAGGCTAGACAA
CTCATGGGACTTGGCAGCCAAA
TAAATCCCACACACATAAAAGTTCCAAGGCAATACCATTTTGCCACATACTAAAAAGCTTTAAACATTTCCAAACACTTTGTGTCTCCTTAGTTT
CTAAATTTCAAACTTCAAGATTGAGTGTCCTGTCCGCGAACAACTTCAAATGGCATCATACACCAAAGAACCATCACGACTGATGGCCCTTTCCA
AACCAATCATTTCTTGTAATCCTCTCATAAAACATCATTTAAGTATGATCCATTTAAAGCACTTCTGGAAACGAATGGAGGAAGGTTATTAAACA
GAAAATGATCTTTCTGTTCCACATAATCAAAGACCCCCGACACAAGGGTCTAAATCTGCTTCATCTGCAGATGCAGCAGCACAAGAAACTCTTGG
GAATCTAAAAACCCCAGGGTTTGTTGACAGCTCACGCTTGCTAATATCAGGTAAACTGAATCGTCTAACAACCTTAACTGCTTCCCCAACAATGT
ATACTTTAAACAGAATTCCTCCGTGGTTGATAAATTCCTGTAGCACAAGTGGGGGTTCTAGCATCTGAAGAGAGAATTTGTCATAGGCTAGACAA
CTCATGGGACTTGGCAGCCAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393817] | SGN-U573921 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195143 [Download][View] | Facility Assigned ID: FA0AAD2AG04FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.960 | Expected Error Rate: 0.0031 | Quality Trim Threshold: 14.5 |
Working
