EST details — SGN-E393854
| Search information |
| Request: 393854 | Match: SGN-E393854 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183155 | Clone name: TUS-41-H1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183155 is on microarray TOM1 spot ID 1-1-8.4.3.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C9310 [cLEC-5-G3] | Trace: SGN-T23680 | EST: SGN-E200845 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183155 [TUS-41-H1] | Trace: SGN-T195627 | EST: SGN-E394301 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183155 [TUS-41-H1] | Trace: SGN-T195627 | EST: SGN-E398861 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183155 [TUS-41-H1] | Trace: SGN-T195628 | EST: SGN-E394302 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183155 [TUS-41-H1] | Trace: SGN-T200155 | EST: SGN-E398862 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393854 | Length: 693 bp (840 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393854 [] (trimmed)
GTCAATCCTCTATTCCAATCCTTATGTATCAGAGCACAACTTTACAACTTCTGTTTAGCTATGTCTGCAGGATCATTCTACTTATGAAAACTTAT
ACCTAGAGAGCTGATAATTAGCAGTACCACCGTATGATGAAGGCTGATTTTGCATATTTTGCAAGTGTAAGAAGGAAACAGTAGAAGCAACAAAT
GATATAGTAACTCAGAGGTTGAGTAATCTACTTTGACTATCCATAAAATCAGTAGTCCACCCCTCCAAGAATTATCTATTAATCGGGGTAAGGAG
TCGTTATGCCCTGAACAAGATTGACCATCTGGCGATCACTATGATGACAACGTTGCTAGTCACAGTAGTACTGATAGTTGAGAGTGAAGCAAACA
GTGGAAGCATGTGAGAATCGATCACAAGGATGAATTTCTAGTTTTAGCTGGAAAGCCAGAAGATGGCAGCAGTGGACTTTGCAACAAAATATAAT
GTACAGAACTGTAACCCTGTATAATAATAGACCAGTTTCAGTTATGCTAATTGATACTAACTAAAAATGTGGCTACCTGAATTCTAACAGTATTC
AAAATTTTGAATGTTATGTGATCTCTAAGTACCCCATGAGCCTATTGGATGCCAGTAGGGTCATTGCAACAACTTATTTTCTACTGGGGAGTTGT
AACTAAGTACAAAATAACTTTTTTTTCC
ACCTAGAGAGCTGATAATTAGCAGTACCACCGTATGATGAAGGCTGATTTTGCATATTTTGCAAGTGTAAGAAGGAAACAGTAGAAGCAACAAAT
GATATAGTAACTCAGAGGTTGAGTAATCTACTTTGACTATCCATAAAATCAGTAGTCCACCCCTCCAAGAATTATCTATTAATCGGGGTAAGGAG
TCGTTATGCCCTGAACAAGATTGACCATCTGGCGATCACTATGATGACAACGTTGCTAGTCACAGTAGTACTGATAGTTGAGAGTGAAGCAAACA
GTGGAAGCATGTGAGAATCGATCACAAGGATGAATTTCTAGTTTTAGCTGGAAAGCCAGAAGATGGCAGCAGTGGACTTTGCAACAAAATATAAT
GTACAGAACTGTAACCCTGTATAATAATAGACCAGTTTCAGTTATGCTAATTGATACTAACTAAAAATGTGGCTACCTGAATTCTAACAGTATTC
AAAATTTTGAATGTTATGTGATCTCTAAGTACCCCATGAGCCTATTGGATGCCAGTAGGGTCATTGCAACAACTTATTTTCTACTGGGGAGTTGT
AACTAAGTACAAAATAACTTTTTTTTCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393854] | SGN-U568637 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195180 [Download][View] | Facility Assigned ID: FA0AAD29CD01FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.961 | Expected Error Rate: 0.0153 | Quality Trim Threshold: 14.5 |
Working
