EST details — SGN-E393862
| Search information |
| Request: 393862 | Match: SGN-E393862 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183267 | Clone name: TUS-41-L17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183267 is on microarray TOM1 spot ID 1-1-8.4.3.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C76012 [cLES-16-I19] | Trace: SGN-T100974 | EST: SGN-E288248 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183267 [TUS-41-L17] | Trace: SGN-T195632 | EST: SGN-E394306 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183267 [TUS-41-L17] | Trace: SGN-T195821 | EST: SGN-E394495 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183267 [TUS-41-L17] | Trace: SGN-T195821 | EST: SGN-E398872 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393862 | Length: 544 bp (850 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393862 [] (trimmed)
AAAAACCCAAATTTCATTAATTTGACTTTGTTTATAAATTTAAAAATTTGATACAAATGGTTTGATTTAATATTTGAAAAATCCGAACCAAACCC
AAATCATATACATCTTAGCCACTTGTGTAAAATAGAACTCTTTTACATAAAAAAAAAAAACTCTCTTCTCCTAAGCTATCCACAAATATAGGAGA
TCTCAAACTTCTATATCTTTTGTTACTCTTTCTCTTTTCTGCTTTTTGCTCTTTCCCTTTCTCTCATTTTGCATTTTCTGTTTCTGGGCTTTACG
ACTTTCTGCTTTCTCCTCAAACCCATCATCCATCATCTTCATTGATGCAACACGCTTCGCCTTGTAAACCTTTGATATATCATCAAGCACCTCAT
TCTCTTTACAATCAAATTTCTCCAATTGTTTCCCAAGCACCGCTTCTATTTCATGAATGAAATCCACATCATTCTGAGTAACAAAGCTGACAGCA
AGTCCACCTCGTCCAGCTCTTGCAGTACGTCCAACACGATGAACATAATCCTGTGGATACCTTGGAATG
AAATCATATACATCTTAGCCACTTGTGTAAAATAGAACTCTTTTACATAAAAAAAAAAAACTCTCTTCTCCTAAGCTATCCACAAATATAGGAGA
TCTCAAACTTCTATATCTTTTGTTACTCTTTCTCTTTTCTGCTTTTTGCTCTTTCCCTTTCTCTCATTTTGCATTTTCTGTTTCTGGGCTTTACG
ACTTTCTGCTTTCTCCTCAAACCCATCATCCATCATCTTCATTGATGCAACACGCTTCGCCTTGTAAACCTTTGATATATCATCAAGCACCTCAT
TCTCTTTACAATCAAATTTCTCCAATTGTTTCCCAAGCACCGCTTCTATTTCATGAATGAAATCCACATCATTCTGAGTAACAAAGCTGACAGCA
AGTCCACCTCGTCCAGCTCTTGCAGTACGTCCAACACGATGAACATAATCCTGTGGATACCTTGGAATG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393862] | SGN-U584582 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195188 [Download][View] | Facility Assigned ID: FA0AAD29CF09FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.918 | Expected Error Rate: 0.0033 | Quality Trim Threshold: 14.5 |
Working
