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EST details — SGN-E393875

Search information 
Request: 393875Match: SGN-E393875
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172628Clone name: TUS-14-A10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172628 is on microarray TOM1 spot ID 1-1-7.1.20.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10711 [cLEC-6-A3] Trace: SGN-T23894 EST: SGN-E202233 Direction: 5' Facility: TIGR
Clone: SGN-C172628 [TUS-14-A10] Trace: SGN-T195202 EST: SGN-E393876 Direction: 5' Facility: INRA
Clone: SGN-C172628 [TUS-14-A10] Trace: SGN-T195646 EST: SGN-E394320 Direction: 3' Facility: INRA
Clone: SGN-C172628 [TUS-14-A10] Trace: SGN-T195646 EST: SGN-E399011 Direction: 3' Facility: INRA
Clone: SGN-C172628 [TUS-14-A10] Trace: SGN-T200444 EST: SGN-E399534 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393875Length: 625 bp (863 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393875 [] (trimmed) CCAATTACAAAATAAACCATTCAAGCAAACATGTTCATTTTACACAACTTTTGACCAAATTATATATACTGTTGTACAACACAACTTTTTAAACC
ATATTTCAAAAACTTGCACACAACCAAATAACCCAAAAAAAAAAAAAAAAAAATAGTAAAAAACAATACATACTTCCTTGTTTTTTTTTTGTGAA
AAAACCAAGTAAAAAGCATCCCCAATTAAAGCTAAAAAACCCAAAATGTAGGTTTTGTGCCAACCCAAAACCACATATATTGGCAACCCCATGTC
CCATGCTCTTTGGCCCACAAACAACAACTCCAACATCTAATTCTTTGCAACCAAAAAGTATTCTTTTTAAATCAGGCCAAGAACCAAAATGCCCC
TTATTACCTTGAACAATTGACTGATAAGAAAGGCTTTCCACCTCCCTTTCAATACCACATAAATTACCAACAGGTGAATTTGTAGAAATTTCCAC
ATTCTGAATTTGTTTGCCTTCAATTTCATTCCCCCCCTTTTGCCACATAAAAATAACACTAGTGACAATAAATATCAAACCACAACCCAAAAACA
TATCCCAAATAATTTTCGCGCTGTAATGATACAATTTCCCATCGCGTTCAATTGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393875] SGN-U582231 Tomato 200607 Build 2 67 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195201 [Download][View] Facility Assigned ID: FA0AAD2BA05FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.877 Expected Error Rate: 0.0199 Quality Trim Threshold: 14.5