EST details — SGN-E393876
| Search information |
| Request: 393876 | Match: SGN-E393876 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172628 | Clone name: TUS-14-A10 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172628 is on microarray TOM1 spot ID 1-1-7.1.20.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10711 [cLEC-6-A3] | Trace: SGN-T23894 | EST: SGN-E202233 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172628 [TUS-14-A10] | Trace: SGN-T195201 | EST: SGN-E393875 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172628 [TUS-14-A10] | Trace: SGN-T195646 | EST: SGN-E394320 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172628 [TUS-14-A10] | Trace: SGN-T195646 | EST: SGN-E399011 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172628 [TUS-14-A10] | Trace: SGN-T200444 | EST: SGN-E399534 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393876 | Length: 725 bp (857 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393876 [] (trimmed)
GCCAAGTGTATCCAAGTTACAATGGCATCCATTTACTATTGTTTCAAGCAGTAATTTGGAGACAGATAAATTAAGTGTTGTAATTAAATGCATGG
GAAGTTGGAGCCAAAAATTAGAAAAACAACTTTCTTCTTCTCCAGATCACCTACAAATATCAACAGAGGGACCTTATGGACCTTCATCGTCTCAT
TTCTTAAGTCGAGAATGCTTGGTGATGATTAGTGGAGGAAGTGGAATTACTCCCATGATTTCAATATTTCGAGAGCTCATTTACAGAAGCACACT
TCAACCAAACACCAAATTACCAAAAGTCATCTTAATTACATCCTTCAAAAACACATCAGATCTCACAATGCTTGATCTCTTGCTCCCTATCACCA
CAGCTCCTTTCGATATCTCCAACTTAGAATGCAAAATCGAAGCTTATATCACTAGAGAAAACGAACCACAACAACACGAGTCGAAACAACAACTC
CTAGTGTTCAAACAAAATCCGAAAGACTCTCCTATTTCTGCAGCACTCGGGAAAAGCAGCTGGCTCTGGCTTGGAGCGATAATTACTTCTTCATT
CTTCATGTTTCTCCTTTTGTTAGGCCTCGTTACGCGTTACTCCATATATCCAATTGAACGCGATGGGAAATTGTATCATTACAGCGCGAAAATTA
TTTGGGATATGTTTTTTGGCTTGTGCTTCGATATTTATTGTCACTAGTGTTATTTTTATG
GAAGTTGGAGCCAAAAATTAGAAAAACAACTTTCTTCTTCTCCAGATCACCTACAAATATCAACAGAGGGACCTTATGGACCTTCATCGTCTCAT
TTCTTAAGTCGAGAATGCTTGGTGATGATTAGTGGAGGAAGTGGAATTACTCCCATGATTTCAATATTTCGAGAGCTCATTTACAGAAGCACACT
TCAACCAAACACCAAATTACCAAAAGTCATCTTAATTACATCCTTCAAAAACACATCAGATCTCACAATGCTTGATCTCTTGCTCCCTATCACCA
CAGCTCCTTTCGATATCTCCAACTTAGAATGCAAAATCGAAGCTTATATCACTAGAGAAAACGAACCACAACAACACGAGTCGAAACAACAACTC
CTAGTGTTCAAACAAAATCCGAAAGACTCTCCTATTTCTGCAGCACTCGGGAAAAGCAGCTGGCTCTGGCTTGGAGCGATAATTACTTCTTCATT
CTTCATGTTTCTCCTTTTGTTAGGCCTCGTTACGCGTTACTCCATATATCCAATTGAACGCGATGGGAAATTGTATCATTACAGCGCGAAAATTA
TTTGGGATATGTTTTTTGGCTTGTGCTTCGATATTTATTGTCACTAGTGTTATTTTTATG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393876] | SGN-U582231 | Tomato 200607 | Build 2 | 67 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195202 [Download][View] | Facility Assigned ID: FA0AAD2BA05RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0051 | Quality Trim Threshold: 14.5 |
Working
