EST details — SGN-E393879
| Search information |
| Request: 393879 | Match: SGN-E393879 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172638 | Clone name: TUS-14-A20 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172638 is on microarray TOM1 spot ID 1-1-5.1.20.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10728 [cLEC-6-B22] | Trace: SGN-T24023 | EST: SGN-E202362 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172638 [TUS-14-A20] | Trace: SGN-T195205 | EST: SGN-E399535 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172638 [TUS-14-A20] | Trace: SGN-T199549 | EST: SGN-E398223 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172638 [TUS-14-A20] | Trace: SGN-T199615 | EST: SGN-E398289 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393879 | Length: 546 bp (868 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393879 [] (trimmed)
ACTAGTTCTCCAAGGCGAAGAGAAACAGTTCTCTGCTGAAGAAATCTCCTCTATGGTTCTTATTAAGATGAAGGAGATAGCTGAGGCTTTTCTTG
GAACAACAATAAAGAATGCTGTTGTTACTGTGCCTGCGTATTTCAATGACTCTCAACGTCAGGCTACTAAGGATGCTGGAACTATTTCTGGGCTC
AATGTTATGCGTATTATCAACGAGCCTACTGCTGCTGCAATTGCATATGGACTTGATAAGAAATCAAGTAGTACAGGGGAGAAAACTGTGCTTAT
TTTTGACTTGGGTGGTGGTACGTTTGATGTCTCACTACTTACTATTGAGGAAGGTATTTTTGAAGTGAAAGCTACTGCTGGTGATACTCATCTTG
GTGGAGAAGATTTTGACAACAGGATGGTTAATCACTTTGTTCAAGAATTCAAGAGGAAGCACAAGAAGGACATCAGTGGGAATCCCAGAGCTCTT
AGGAGGGGAGGAACTGCATGTGAAAGAGCTAAAAGAACACTCTCATCCACTGCTCAGACAACTATTGAAAT
GAACAACAATAAAGAATGCTGTTGTTACTGTGCCTGCGTATTTCAATGACTCTCAACGTCAGGCTACTAAGGATGCTGGAACTATTTCTGGGCTC
AATGTTATGCGTATTATCAACGAGCCTACTGCTGCTGCAATTGCATATGGACTTGATAAGAAATCAAGTAGTACAGGGGAGAAAACTGTGCTTAT
TTTTGACTTGGGTGGTGGTACGTTTGATGTCTCACTACTTACTATTGAGGAAGGTATTTTTGAAGTGAAAGCTACTGCTGGTGATACTCATCTTG
GTGGAGAAGATTTTGACAACAGGATGGTTAATCACTTTGTTCAAGAATTCAAGAGGAAGCACAAGAAGGACATCAGTGGGAATCCCAGAGCTCTT
AGGAGGGGAGGAACTGCATGTGAAAGAGCTAAAAGAACACTCTCATCCACTGCTCAGACAACTATTGAAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393879] | SGN-U579872 | Tomato 200607 | Build 2 | 71 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195205 [Download][View] | Facility Assigned ID: FA0AAD2BA10RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.953 | Expected Error Rate: 0.0098 | Quality Trim Threshold: 14.5 |
Working
