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EST details — SGN-E393910

Search information 
Request: 393910Match: SGN-E393910
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172786Clone name: TUS-14-G24
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172786 is on microarray TOM1 spot ID 1-1-1.3.20.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10947 [cLEC-6-L2] Trace: SGN-T24049 EST: SGN-E202388 Direction: 5' Facility: TIGR
Clone: SGN-C172786 [TUS-14-G24] Trace: SGN-T195678 EST: SGN-E394352 Direction: 3' Facility: INRA
Clone: SGN-C172786 [TUS-14-G24] Trace: SGN-T195678 EST: SGN-E399063 Direction: 3' Facility: INRA
Clone: SGN-C172786 [TUS-14-G24] Trace: SGN-T195679 EST: SGN-E394353 Direction: 5' Facility: INRA
Clone: SGN-C172786 [TUS-14-G24] Trace: SGN-T200214 EST: SGN-E399064 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393910Length: 553 bp (821 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393910 [] (trimmed) ACTCTCCTAAAACATGTACATAACGAGCAAGCTCTTCAAATATACTCTTTCAATCTCTAATGTCTCAACTCAAGTTCCTGCTGGCAATAAAAATA
CAAGGTTAAATTAAACAAAGAGGAACGGTTAGTTCATTCTACCCTGAATACATACCCCATTATATATTGGGAATCTACAAATACAAGTACAGTAG
CCGACGCACACTATACACAGAGTCTAAAGCAACTCCAAACACCAATAAAGACCACAAGAAGACTTGCAACCACAAGAACCTTGGACATGTAAACG
TGTGATGAACTTGAGAGCTTTGTAGCGGACTTAAAGGACACATCAAGACTTTCTTCTATTGGAGAGTCATCTGCATCTTTCACTTGAGTGCTCAA
CTCATCAGTTTCCCCAACAAGATCTTTAATTGTTGTAGTATCACTGGTGGTAGAAATATGTTCATCAGAGGCTTTGGGGGGGGGGGGGGGTGCTT
CATGAATTTCTGCCCCCTCACTAGAAATCAGAGCGCATGCGACACTCAACTGGTCCGACTTGCATTTTTCATATGTAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393910] SGN-U569516 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195236 [Download][View] Facility Assigned ID: FA0AAD2BD12FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.973 Expected Error Rate: 0.0148 Quality Trim Threshold: 14.5