EST details — SGN-E393950

Search information 
Request: 393950Match: SGN-E393950
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182570Clone name: TUS-39-O16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182570 is on microarray TOM1 spot ID 1-1-1.3.8.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C182570 [TUS-39-O16] Trace: SGN-T195275 EST: SGN-E393949 Direction: 3' Facility: INRA
Clone: SGN-C182570 [TUS-39-O16] Trace: SGN-T195276 EST: SGN-E398831 Direction: 5' Facility: INRA
Clone: SGN-C182570 [TUS-39-O16] Trace: SGN-T200433 EST: SGN-E399504 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393950Length: 368 bp (873 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393950 [] (trimmed) CCCTTGAACTTATCCAAATAGGGGGGTCCAATTTATGTAACTTGTAAAGGGAATTCAGTTGATTTATACGGAAAACCAGGTCACCATTATTTATA
CAAACAAGTCGTTTATTTTTTCAAACACTGTCACATAAATTGAAACAAAATACTAAAATACAAGTACTTTCAAATAGGAAAAAGCCTTATATATT
TGAAATTATGACTCTGAAAGTCAGGTTGTAAATATCTTGAAGTTTTTTCAGGGCCAAGGGAGGTAAACTTATAGCTATCAAAACACCTTTTTCTC
CTTTGTCATTTTTAACAGAAACCCCAAAACTAGTGAAAGATATAGCCTTTTTTTTTTTTTCAAAAAGGGGGTTTCCCCGGGGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393950] SGN-U579261 Tomato 200607 Build 2 5 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195276 [Download][View] Facility Assigned ID: FA0AAD27BH08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.905 Expected Error Rate: 0.0148 Quality Trim Threshold: 14.5