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EST details — SGN-E393953

Search information 
Request: 393953Match: SGN-E393953
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182572Clone name: TUS-39-O18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182572 is on microarray TOM1 spot ID 1-1-7.3.7.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C182572 [TUS-39-O18] Trace: SGN-T195277 EST: SGN-E393951 Direction: 3' Facility: INRA
Clone: SGN-C182572 [TUS-39-O18] Trace: SGN-T195277 EST: SGN-E398832 Direction: 3' Facility: INRA
Clone: SGN-C182572 [TUS-39-O18] Trace: SGN-T195278 EST: SGN-E393952 Direction: 3' Facility: INRA
Clone: SGN-C182572 [TUS-39-O18] Trace: SGN-T200136 EST: SGN-E398833 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393953Length: 666 bp (843 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393953 [] (trimmed) GCAGTTCCTCCATTGAAAAGAACTATGAGTTGCCAGATGGACAGGTTATTACCATTGGTGCTGAGAGGTTCCGTTGCCCAGAGGTACTCTTCCAA
CCATCAATGATTGGAATGGAAGCTGCGGGTATCCATGAGACTACATACAACTCCATCATGAAATGTGATGTAGATATTAGGAAGGACCTCTATGG
TAACATTGTTCTCAGTGGTGGCTCCACCATGTTCCCTGGTATTGCTGATCGGATGAGCAAGGAAATCACTGCTTTGGCTCCAAGCAGCATGAAAA
TTAAGGTTGTTGCACCACCTGAGAGGAAGTACAGTGTCTGGATTGGAGGATCCATTCTTGCATCCCTCAGCACATTCCAGCAGATGTGGATCTCA
AAGGGCGAGTATGATGAGTCTGGTCCTTCCATTGTCCACAGAAAGTGCTTCTAAGGTGCTGCTATAATTACTTAAAAGTGCGAGTGTCCTGTCTG
TTTCCCGGTTTTGCTATTATGTTGCCAGTCAATTTGTTTTTTTGATGGGATGGAGAAGTTTGGTGGTGGGGGCTATGAATGCACGGTAGCAAACA
ACAGATTGCCAGTATTATCTCATGTTTCCATTTAATGTGGTTAATATTCTCTACATACTTGAGAGGTGCCTGATGCATTGCCCTCTTCTGTCTGG
C
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393953] SGN-U579208 Tomato 200607 Build 2 88 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195279 [Download][View] Facility Assigned ID: FA0AAD27BH09RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.973 Expected Error Rate: 0.0015 Quality Trim Threshold: 14.5