EST details — SGN-E393973
| Search information |
| Request: 393973 | Match: SGN-E393973 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172689 | Clone name: TUS-14-C23 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172689 is on microarray TOM1 spot ID 1-1-2.3.20.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10807 [cLEC-6-F16] | Trace: SGN-T24214 | EST: SGN-E202553 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172689 [TUS-14-C23] | Trace: SGN-T195562 | EST: SGN-E394236 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172689 [TUS-14-C23] | Trace: SGN-T195562 | EST: SGN-E398915 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172689 [TUS-14-C23] | Trace: SGN-T195741 | EST: SGN-E394415 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172689 [TUS-14-C23] | Trace: SGN-T195741 | EST: SGN-E399518 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172689 [TUS-14-C23] | Trace: SGN-T199433 | EST: SGN-E398107 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393973 | Length: 693 bp (809 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393973 [] (trimmed)
GCTAATTCAACTTTTCTATATCATCTTCATCACTAATCTCATCGGTAAATTAATATTTAGCAGCATGCCGTCAGTCTCCGGTCGGGTCGTCTGTG
TTACCGGTGCCGGAGGCTTCATCGCCTCTTGGCTCGTTAAACTTCTTTTGGAAAAAGGCTACACTGTTAGGGGAACTGTAAGAAATCCTGATGAT
CCAAAGAATTGTCATTTGAGAGAACTTGAAGGAGCAAAAGAGAGGCTAACACTATGCAGAGGTGATCTTCTTGATTATCAGAGTTTGCGTGAAGC
AATCAATGGCTGTGACGGAGTTTTCCACACAGCTTCACCAGTTACTGATGATCCAGAACAAATGGTGGAGCCAGCAGTAATTGGTACTAAGAATG
TGATAACAGCAGCAGCAGAGGCCAATGTAAGACGCGTTGTGTTTACTTCCTCAATTGGAGCTGTGTACATGGACCCAAGCAGAGACCCTGAAAAA
GTGGTTGACGAGACTTGCTGGAGCGATCCTGATTTTTGCAAGAACACTAAGAATTGGTATTGTTATGGTAAGATGGTGGCAGAACAAGCAGCGTG
GGATGAGGCGAGGGAGAAAGGAGTTGATTTAGTCGCGATAAATCCAGTGTTGGTGCTTGGACCATTGCTACAAAATACTGTGAATGCTAGTGTTC
TTCATATCCTCAAGTACCTTACTGGCTC
TTACCGGTGCCGGAGGCTTCATCGCCTCTTGGCTCGTTAAACTTCTTTTGGAAAAAGGCTACACTGTTAGGGGAACTGTAAGAAATCCTGATGAT
CCAAAGAATTGTCATTTGAGAGAACTTGAAGGAGCAAAAGAGAGGCTAACACTATGCAGAGGTGATCTTCTTGATTATCAGAGTTTGCGTGAAGC
AATCAATGGCTGTGACGGAGTTTTCCACACAGCTTCACCAGTTACTGATGATCCAGAACAAATGGTGGAGCCAGCAGTAATTGGTACTAAGAATG
TGATAACAGCAGCAGCAGAGGCCAATGTAAGACGCGTTGTGTTTACTTCCTCAATTGGAGCTGTGTACATGGACCCAAGCAGAGACCCTGAAAAA
GTGGTTGACGAGACTTGCTGGAGCGATCCTGATTTTTGCAAGAACACTAAGAATTGGTATTGTTATGGTAAGATGGTGGCAGAACAAGCAGCGTG
GGATGAGGCGAGGGAGAAAGGAGTTGATTTAGTCGCGATAAATCCAGTGTTGGTGCTTGGACCATTGCTACAAAATACTGTGAATGCTAGTGTTC
TTCATATCCTCAAGTACCTTACTGGCTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393973] | SGN-U570355 | Tomato 200607 | Build 2 | 21 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195299 [Download][View] | Facility Assigned ID: FA0AAD2AB12RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.981 | Expected Error Rate: 0.0042 | Quality Trim Threshold: 14.5 |
Working
