EST details — SGN-E393978
| Search information |
| Request: 393978 | Match: SGN-E393978 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172765 | Clone name: TUS-14-G3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172765 is on microarray TOM1 spot ID 1-1-6.3.20.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C172765 [TUS-14-G3] | Trace: SGN-T195117 | EST: SGN-E393791 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172765 [TUS-14-G3] | Trace: SGN-T195118 | EST: SGN-E393792 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172765 [TUS-14-G3] | Trace: SGN-T195118 | EST: SGN-E399521 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172765 [TUS-14-G3] | Trace: SGN-T195304 | EST: SGN-E398932 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172765 [TUS-14-G3] | Trace: SGN-T199540 | EST: SGN-E398214 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393978 | Length: 669 bp (851 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393978 [] (trimmed)
TAATGTTGAGGATGCTAATGGCCAGCGGCCAGCTGATGTGATTGTTGTTCCACCAAAGCTTCCTGGTACTAGAGCTTCTCTTGAAAAACTGCTTC
TGAATAATTCATCTGATGGCTCAGTTGGTGACTGCAAATTGACAGTATCTGTGGCTACTTCAGATGCATCCTCTCCCATTCTCTCCTCATCACCA
GAAAATGGATCTCCTTGTTCATCATTGGAGTCCTCGTCTTCCCCTATGGCATCGAAGTTCAGTGACCTCCCTGCTAATTCTGCACGAGAGAAAAA
AGAGTATCCAATAGATCCGTCTCTCCCTGACATCCAGAATAGTATATATTCAACGGATGAGTTCCGCATGTTCTCTTTTAAGGTTCGGCCATGTT
CTAGGGCCTATTCACATGACTGGACAGAGTGCCCATTTGTCCACCCTGGAGAGAACGCTCGTAGAAGAGATCCAAGGAAGTACCACTATAGCTGT
GTGCCTTGTCCTGAATTTCGCAAGGGTGCATGCCGACGCGGTGATATGTGCGAATATGCTCATGGGGTGTTTGAGTGCTGGCTACACCCTGCTCA
GTATCGTACCCGCCTGTGCAAGGATGGTACAAGCTGTGCTAGACGAATCTGCTTTTTTGCCCATACTACGGAGGAGCTTAGGCCCTTGTATGTCT
CTAC
TGAATAATTCATCTGATGGCTCAGTTGGTGACTGCAAATTGACAGTATCTGTGGCTACTTCAGATGCATCCTCTCCCATTCTCTCCTCATCACCA
GAAAATGGATCTCCTTGTTCATCATTGGAGTCCTCGTCTTCCCCTATGGCATCGAAGTTCAGTGACCTCCCTGCTAATTCTGCACGAGAGAAAAA
AGAGTATCCAATAGATCCGTCTCTCCCTGACATCCAGAATAGTATATATTCAACGGATGAGTTCCGCATGTTCTCTTTTAAGGTTCGGCCATGTT
CTAGGGCCTATTCACATGACTGGACAGAGTGCCCATTTGTCCACCCTGGAGAGAACGCTCGTAGAAGAGATCCAAGGAAGTACCACTATAGCTGT
GTGCCTTGTCCTGAATTTCGCAAGGGTGCATGCCGACGCGGTGATATGTGCGAATATGCTCATGGGGTGTTTGAGTGCTGGCTACACCCTGCTCA
GTATCGTACCCGCCTGTGCAAGGATGGTACAAGCTGTGCTAGACGAATCTGCTTTTTTGCCCATACTACGGAGGAGCTTAGGCCCTTGTATGTCT
CTAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393978] | SGN-U566806 | Tomato 200607 | Build 2 | 58 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195304 [Download][View] | Facility Assigned ID: FA0AAD2AD02FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.982 | Expected Error Rate: 0.0034 | Quality Trim Threshold: 14.5 |
Working
