EST details — SGN-E394003
| Search information |
| Request: 394003 | Match: SGN-E394003 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172971 | Clone name: TUS-14-O17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172971 is on microarray TOM1 spot ID 1-1-8.3.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14389 [cLEC-7-M11] | Trace: SGN-T25225 | EST: SGN-E201943 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172971 [TUS-14-O17] | Trace: SGN-T195611 | EST: SGN-E394285 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172971 [TUS-14-O17] | Trace: SGN-T195611 | EST: SGN-E398998 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172971 [TUS-14-O17] | Trace: SGN-T199614 | EST: SGN-E398288 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172971 [TUS-14-O17] | Trace: SGN-T200198 | EST: SGN-E398997 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394003 | Length: 678 bp (835 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394003 [] (trimmed)
CAATTCTAGGGTTTCTAATTTTCTCTCTCTCTCTAAAAAAAAACTCTACTAATTGGTAGCATGCTTTAACAAGAATCAAGTAATAACATAGCTTG
AAAGACTTTGCAACTACCAAAAGGAAAATTTAAGGTATCTTTTTATTATATTTTCTTCAATTTTTTTTTTTATATATATAGGGCTAAGAGACCTA
TAAAAATCCCTACAATCTGTTAGTAAGTTAGTTGATTTTTTTGACAATAATATGAAAATTACTGTGACTTTTTATTAGTTGATGTGAGAAAAAAA
TGAAAGAAAAGACATGTTTTGCGGAAGTTTGCAGGTGGAATGTCGGATATTTACTTTAAAAAGGCAGCATAGTAAGTTTACCATATGTTTTACTG
TTTTGCTCCAAAATTAAATTTAAACTATATCAAATTTATATAGTGTGTGTTTTTAGTAAATTGACAAATCAACATTACTGAGCATGATATTTTTT
TTAAAATGTTTCCTTTTATTATAATTTCAAAATAAGAGGCCGTTTTGATTAGACTGATATATAGTAAGTAGATTTTATGCATATCATTTGATGCT
TTAGCTAATTTGATATATTTGACTTTTTTCAACATAAAATTAAGTTTCATTTTACCATATAGTTTTAAAGCTATGATCCCTATAAACCTATTTCT
TCCCTCGTCCTAA
AAAGACTTTGCAACTACCAAAAGGAAAATTTAAGGTATCTTTTTATTATATTTTCTTCAATTTTTTTTTTTATATATATAGGGCTAAGAGACCTA
TAAAAATCCCTACAATCTGTTAGTAAGTTAGTTGATTTTTTTGACAATAATATGAAAATTACTGTGACTTTTTATTAGTTGATGTGAGAAAAAAA
TGAAAGAAAAGACATGTTTTGCGGAAGTTTGCAGGTGGAATGTCGGATATTTACTTTAAAAAGGCAGCATAGTAAGTTTACCATATGTTTTACTG
TTTTGCTCCAAAATTAAATTTAAACTATATCAAATTTATATAGTGTGTGTTTTTAGTAAATTGACAAATCAACATTACTGAGCATGATATTTTTT
TTAAAATGTTTCCTTTTATTATAATTTCAAAATAAGAGGCCGTTTTGATTAGACTGATATATAGTAAGTAGATTTTATGCATATCATTTGATGCT
TTAGCTAATTTGATATATTTGACTTTTTTCAACATAAAATTAAGTTTCATTTTACCATATAGTTTTAAAGCTATGATCCCTATAAACCTATTTCT
TCCCTCGTCCTAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394003] | SGN-U585494 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195329 [Download][View] | Facility Assigned ID: FA0AAD2AH09RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.905 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |
Working
