EST details — SGN-E394004
| Search information |
| Request: 394004 | Match: SGN-E394004 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172973 | Clone name: TUS-14-O19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172973 is on microarray TOM1 spot ID 1-1-6.3.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14398 [cLEC-7-M21] | Trace: SGN-T25401 | EST: SGN-E202119 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172973 [TUS-14-O19] | Trace: SGN-T195157 | EST: SGN-E393831 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172973 [TUS-14-O19] | Trace: SGN-T195612 | EST: SGN-E394286 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172973 [TUS-14-O19] | Trace: SGN-T195612 | EST: SGN-E398999 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172973 [TUS-14-O19] | Trace: SGN-T195613 | EST: SGN-E394287 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172973 [TUS-14-O19] | Trace: SGN-T195613 | EST: SGN-E399532 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394004 | Length: 676 bp (834 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394004 [] (trimmed)
GTTTTGTTCAGAAGACTTTGATATGCTTGGATTGTGCTGTCACATTGATAGCGAGCATCGGATAGAGGCTAAGACCGGGATATGTCCTCTATGTG
CTACCAAGGTGCGAACAAATATGGCTACACACGTCATCGTGCAGCATGAAAGCATTTTAAAAATATCCTTCATTTCCTATATTTCAGTATATTAA
TTTCACACGGTAATGGATAAGAGTAAGGAGTTATTATTTTTTCATAGCTGATTGTAAGAGAATAGCAAATCTAGCTACTACAATTTCTACTGCTT
GCATATTCTCTTGGTTGCAGTGTATCTTGAAACTTGTTCTTTATAGTTAATTGGGAATATAATATCAAATTCCTTGGGTTTGAGTGTCAGCTAAC
TTGCTGAGCTCTCTACCTTCCACAAATTGAGGTGGAGGGTTCAGATCCCATTATTAGCTTACATGCATTTCTTTCTTTTCTGTTCTCCCTCCCTG
ATATATTTTTAGAAACAGAAAATAAAAATTTAAAAACATGAAATTGAATTTCCCATGTTAATATCTGGAATAATGACCTTGATATTTGCTTATAT
GGTGAATTGGCATGAGTAGTCAAGTGGCTACTTAATTTTGCTTGGTGCACTTGTCTGCGTATTTCATAACTCCAATATCTTCCTCCGTCTTTATG
TGTGCAAAGGC
CTACCAAGGTGCGAACAAATATGGCTACACACGTCATCGTGCAGCATGAAAGCATTTTAAAAATATCCTTCATTTCCTATATTTCAGTATATTAA
TTTCACACGGTAATGGATAAGAGTAAGGAGTTATTATTTTTTCATAGCTGATTGTAAGAGAATAGCAAATCTAGCTACTACAATTTCTACTGCTT
GCATATTCTCTTGGTTGCAGTGTATCTTGAAACTTGTTCTTTATAGTTAATTGGGAATATAATATCAAATTCCTTGGGTTTGAGTGTCAGCTAAC
TTGCTGAGCTCTCTACCTTCCACAAATTGAGGTGGAGGGTTCAGATCCCATTATTAGCTTACATGCATTTCTTTCTTTTCTGTTCTCCCTCCCTG
ATATATTTTTAGAAACAGAAAATAAAAATTTAAAAACATGAAATTGAATTTCCCATGTTAATATCTGGAATAATGACCTTGATATTTGCTTATAT
GGTGAATTGGCATGAGTAGTCAAGTGGCTACTTAATTTTGCTTGGTGCACTTGTCTGCGTATTTCATAACTCCAATATCTTCCTCCGTCTTTATG
TGTGCAAAGGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394004] | SGN-U572070 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195330 [Download][View] | Facility Assigned ID: FA0AAD2AH10RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.954 | Expected Error Rate: 0.0022 | Quality Trim Threshold: 14.5 |
Working
