EST details — SGN-E394081
| Search information |
| Request: 394081 | Match: SGN-E394081 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172930 | Clone name: TUS-14-M24 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172930 is on microarray TOM1 spot ID 1-1-1.1.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14304 [cLEC-7-H6] | Trace: SGN-T25492 | EST: SGN-E202210 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172930 [TUS-14-M24] | Trace: SGN-T195257 | EST: SGN-E393931 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172930 [TUS-14-M24] | Trace: SGN-T195407 | EST: SGN-E399548 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172930 [TUS-14-M24] | Trace: SGN-T195408 | EST: SGN-E394082 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172930 [TUS-14-M24] | Trace: SGN-T200223 | EST: SGN-E399098 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394081 | Length: 654 bp (822 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394081 [] (trimmed)
CCGATCTCACAGAAAATAAAAGAAGTGGTTGGATTACAACCATAACTGGTCAATATCGGTATCTGCATATTAATGCTGGCAGTCAGTCATATTCA
ATTGACTGATTGCCCAATTGCAGATGGGTACCCAGAGTCCAGTGAATCCTAAGACAGCCTTGGAGGGTGTGCATGGAGTGCAAGTGGTGCCTCAT
TCACCATTTGCATTGGAAGAGATAAAACAACATGGAGGCTTACATAGACGGAGCCATGCAAGTTTTCCTGTTGGAACAAGACACCACCTAATAGT
GCAGAGAGTTTGGCAGCAAAGGCCTGGTTGCCTCAGGCCCATCCGTTGCAGTTGCCATGGTGATCGTACTGTTGCTGAAACTATTGCGAATGTGA
TCACTTCTCTTCCTTTTATTGCTCTTGGACTTCAGGCTCCGAGGAAAAATCTTCATTGCAAACTTTATGCCAATTCATTGATTGGAGTTGGAATT
ATCTCCAGTTTGTACCATGCTTCGAGAGGCAAAATAAGGCGCTATATGAGATGGGCTGACTACTCAATGATAGCAACAGCAACAGTGTGTCTATC
AAGGGCACTTAGAAATGAGAATCCCAAATTGCTGATGGCAGCGTCTGCAGTCCTCCTACCGATCCAACCTCTGATGGTTTCTGC
ATTGACTGATTGCCCAATTGCAGATGGGTACCCAGAGTCCAGTGAATCCTAAGACAGCCTTGGAGGGTGTGCATGGAGTGCAAGTGGTGCCTCAT
TCACCATTTGCATTGGAAGAGATAAAACAACATGGAGGCTTACATAGACGGAGCCATGCAAGTTTTCCTGTTGGAACAAGACACCACCTAATAGT
GCAGAGAGTTTGGCAGCAAAGGCCTGGTTGCCTCAGGCCCATCCGTTGCAGTTGCCATGGTGATCGTACTGTTGCTGAAACTATTGCGAATGTGA
TCACTTCTCTTCCTTTTATTGCTCTTGGACTTCAGGCTCCGAGGAAAAATCTTCATTGCAAACTTTATGCCAATTCATTGATTGGAGTTGGAATT
ATCTCCAGTTTGTACCATGCTTCGAGAGGCAAAATAAGGCGCTATATGAGATGGGCTGACTACTCAATGATAGCAACAGCAACAGTGTGTCTATC
AAGGGCACTTAGAAATGAGAATCCCAAATTGCTGATGGCAGCGTCTGCAGTCCTCCTACCGATCCAACCTCTGATGGTTTCTGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394081] | SGN-U567235 | Tomato 200607 | Build 2 | 18 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195407 [Download][View] | Facility Assigned ID: FA0AAD2BG12FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 0.0031 | Quality Trim Threshold: 14.5 |
Working
