EST details — SGN-E394156

Search information 
Request: 394156Match: SGN-E394156
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183481Clone name: TUS-42-E15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183481 is on microarray TOM1 spot ID 1-1-2.1.1.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C72984 [cLER-2-M22] Trace: SGN-T92496 EST: SGN-E278778 Direction: 5' Facility: TIGR
Clone: SGN-C183481 [TUS-42-E15] Trace: SGN-T194926 EST: SGN-E393600 Direction: 3' Facility: INRA
Clone: SGN-C183481 [TUS-42-E15] Trace: SGN-T194927 EST: SGN-E393601 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394156Length: 506 bp (876 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394156 [] (trimmed) ACTAGTTCCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATT
TTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCA
GATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAGCCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAGGCGGGAT
AGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTG
TTGGGATGGCGGAAGTACTTGGATGGGAACCAAGGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGC
GGTGGGGGGGGGGGGGGGGAACTCCAGATAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394156] SGN-U574218 Tomato 200607 Build 2 15 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195482 [Download][View] Facility Assigned ID: FA0AAD30AC08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.953 Expected Error Rate: 0.0017 Quality Trim Threshold: 14.5