EST details — SGN-E394164

Search information 
Request: 394164Match: SGN-E394164
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183563Clone name: TUS-42-I1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183563 is on microarray TOM1 spot ID 1-1-8.1.2.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C32421 [cLEG-1-G9] Trace: SGN-T64431 EST: SGN-E248368 Direction: 5' Facility: TIGR
Clone: SGN-C183563 [TUS-42-I1] Trace: SGN-T195956 EST: SGN-E394630 Direction: 3' Facility: INRA
Clone: SGN-C183563 [TUS-42-I1] Trace: SGN-T195956 EST: SGN-E399161 Direction: 3' Facility: INRA
Clone: SGN-C183563 [TUS-42-I1] Trace: SGN-T200243 EST: SGN-E399162 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394164Length: 472 bp (811 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394164 [] (trimmed) CTGCCGTGTCCCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGA
ACTGTTAAAGCTACCGACTTTAAGAAAATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGT
TCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAG
AAGTGGCTTATCTTTTAATGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCACCAGTTCCTCAG
GGAGTTTTGGATATCCTACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGACCCCCCCTATCTGTCTTTCATC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394164] SGN-U573543 Tomato 200607 Build 2 13 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195490 [Download][View] Facility Assigned ID: FA0AAD30AE01RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.980 Expected Error Rate: 0.0095 Quality Trim Threshold: 14.5