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EST details — SGN-E394168

Search information 
Request: 394168Match: SGN-E394168
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183615Clone name: TUS-42-K5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183615 is on microarray TOM1 spot ID 1-1-4.3.2.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C66801 [cLEN-16-A19] Trace: SGN-T90686 EST: SGN-E274963 Direction: 5' Facility: TIGR
Clone: SGN-C183615 [TUS-42-K5] Trace: SGN-T195494 EST: SGN-E399174 Direction: 5' Facility: INRA
Clone: SGN-C183615 [TUS-42-K5] Trace: SGN-T199407 EST: SGN-E398081 Direction: 3' Facility: INRA
Clone: SGN-C183615 [TUS-42-K5] Trace: SGN-T200250 EST: SGN-E399173 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394168Length: 487 bp (868 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394168 [] (trimmed) AAGTGGAAAAATGTTATTACTTGTATGAGATTATACAATAATGATCTGTCATTGCATTGACAAGAAAAAATCCAAGAAACTTATGTTTCAATCTC
TGGATAAATAATTAAACTTTTACAGCTGGAGGGAAAAAAAAATCATGAACTCAACGTATTTATACAAAGTATTGGGATTCACAAAAGAAAAGTAA
GATATAAAAGAGGATGTAACTATTGAGTTGAAGTGTCTCTTGTCAACACCTATGGCTATATTCTTCCTTCTTCCATAAGCCCCCTCTGAATCCTG
CATCTTCAATTGGAAATGCCTCCACCTCGGGGCACCAGCTAGCCTTGAGTATTCTTAACGAAGGCATCACTCGATTTACTGCTGACCACTCCAAT
CTCAAATCAGTTAAAGCTTCCAACATTAACCCCTCAATTTTCCAAACAGTAGTGTGATCACCCCAGAAGTTGTCGTGCATTTCGTTCAGATCAGC
TGAATTGATTGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394168] SGN-U565272 Tomato 200607 Build 2 23 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195494 [Download][View] Facility Assigned ID: FA0AAD30AF03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.952 Expected Error Rate: 0.0071 Quality Trim Threshold: 14.5