EST details — SGN-E394258

Search information 
Request: 394258Match: SGN-E394258
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172827Clone name: TUS-14-I17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172827 is on microarray TOM1 spot ID 1-1-8.1.20.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C11008 [cLEC-6-O14] Trace: SGN-T23979 EST: SGN-E202318 Direction: 5' Facility: TIGR
Clone: SGN-C172827 [TUS-14-I17] Trace: SGN-T195751 EST: SGN-E394425 Direction: 3' Facility: INRA
Clone: SGN-C172827 [TUS-14-I17] Trace: SGN-T200181 EST: SGN-E398950 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394258Length: 541 bp (874 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394258 [] (trimmed) ATAATAAAGATCTTACACTAAAAGACTAGAACTACTAAATAGTACATCCAACAAAACAAACAAAGGGCTACACAGTTGCTTTGCCAAATTTTCTA
TTGAACAAAGTTATGTATTTTTTTCTATGCAAAAGTAAACAATAGAAACAGTTTCAATCAAATCTAATTAATAATTATCAATATCATCCCCACTA
CAACATTATACAAACAACAAATAAAAATTTAAAAACCCAAACTAAAGTCATACAATTTTGTAACCAGCACCCCCTTTAGCCATTTCAACAGCAGT
TCCATTCCTAGTTCCAGGATAATCAACTTCAGTCATGAACTTAGACCAGAACCAATGTTCTTTCCACACAATCACCATCTCTTCTATCGGAATAT
TTTTCGTCTCAGGCAAGAAGAAGTATATGAACACAGTCATAATCACCACAAAGAAGGCGAAAAACAGAAACAATCCAAACTTCAAATGACACAAC
ATTGTTAAGAAAACTTGTGCTACTGCAAATGTGAAGATCATGTTCACTGAGACATTGATACTTTGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394258] SGN-U584262 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195584 [Download][View] Facility Assigned ID: FA0AAD2AE09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.916 Expected Error Rate: 0.0031 Quality Trim Threshold: 14.5