EST details — SGN-E394276
| Search information |
| Request: 394276 | Match: SGN-E394276 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172925 | Clone name: TUS-14-M19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172925 is on microarray TOM1 spot ID 1-1-6.1.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14296 [cLEC-7-H19] | Trace: SGN-T25459 | EST: SGN-E202177 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172925 [TUS-14-M19] | Trace: SGN-T195149 | EST: SGN-E393823 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172925 [TUS-14-M19] | Trace: SGN-T195324 | EST: SGN-E393998 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172925 [TUS-14-M19] | Trace: SGN-T195602 | EST: SGN-E398983 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172925 [TUS-14-M19] | Trace: SGN-T195603 | EST: SGN-E394277 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172925 [TUS-14-M19] | Trace: SGN-T195603 | EST: SGN-E398984 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394276 | Length: 661 bp (850 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394276 [] (trimmed)
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGAGCTGGACGTATCGAA
GGACGAACGGGCTCCATCACACAAATTCCGATTCTGACCATGCCTAATGATGATATTACACATCCAACCCCAGATCTTACAGGTTACATCACCGA
AGGACAAATATATATTGATCGACAGCTTCACAATCGGCAGATATACCCACCAATCAATGTGCTTCCATCCTTGTCTCGGTTGATGAAGAGTGCCA
TTGGTGAGGGTATGACTAGGAGGGATCATTCTGATGTGTCCAACCAGCTGTATGCAAATTATGCTATTGGCAAGGATGTCCAGGCAATGAAAGCT
GTGGTTGGAGAAGAAGCACTGTCTTCTGAGGATCTGCTTTACTTAGAGTTTCTTGACAAATTTGAGAGGAAGTTTGTTAGCCAAGGAGCCTATGA
CACCCGCAACATATTCCAGTCGCTTGATTTAGCTTGGACACTCCTTCGCATCTTCCCTCGTGAGCTTCTCCATCGTATCCCTGCAAAGACCCTGG
ATCAGTATTACAGCCGTGATGCTTCTAATTGAAGGAACCAGCTATGTACTTAATTACCTGTGTTGACTGCCTTGGAGTGAGCTTGATGATA
GGACGAACGGGCTCCATCACACAAATTCCGATTCTGACCATGCCTAATGATGATATTACACATCCAACCCCAGATCTTACAGGTTACATCACCGA
AGGACAAATATATATTGATCGACAGCTTCACAATCGGCAGATATACCCACCAATCAATGTGCTTCCATCCTTGTCTCGGTTGATGAAGAGTGCCA
TTGGTGAGGGTATGACTAGGAGGGATCATTCTGATGTGTCCAACCAGCTGTATGCAAATTATGCTATTGGCAAGGATGTCCAGGCAATGAAAGCT
GTGGTTGGAGAAGAAGCACTGTCTTCTGAGGATCTGCTTTACTTAGAGTTTCTTGACAAATTTGAGAGGAAGTTTGTTAGCCAAGGAGCCTATGA
CACCCGCAACATATTCCAGTCGCTTGATTTAGCTTGGACACTCCTTCGCATCTTCCCTCGTGAGCTTCTCCATCGTATCCCTGCAAAGACCCTGG
ATCAGTATTACAGCCGTGATGCTTCTAATTGAAGGAACCAGCTATGTACTTAATTACCTGTGTTGACTGCCTTGGAGTGAGCTTGATGATA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394276] | SGN-U577585 | Tomato 200607 | Build 2 | 109 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195602 [Download][View] | Facility Assigned ID: FA0AAD2AG10FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.952 | Expected Error Rate: 0.0053 | Quality Trim Threshold: 14.5 |
Working
