EST details — SGN-E394499

Search information 
Request: 394499Match: SGN-E394499
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183014Clone name: TUS-41-B4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183014 is on microarray TOM1 spot ID 1-1-5.2.3.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4555 [cLEC-27-M19] Trace: SGN-T28825 EST: SGN-E204091 Direction: 5' Facility: TIGR
Clone: SGN-C183014 [TUS-41-B4] Trace: SGN-T195826 EST: SGN-E394500 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E394499Length: 579 bp (881 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E394499 [] (trimmed) AGTTGTAAAAAGTGAACTTATTCAATGTATGAAGTCCAGAAAGAGTACAATAATGCGGATCTCTTTCAAGGAAGAATGTTTGCTCATCTCCTACT
AAGCATCCAATAAGTCTACCTTACATCAAATCAGTTGGATATTAAATTTCCAATACAGATGAATTTATAAAGACAACTTCGTTGTCATTAATTCA
TAGCAGCAAATGTATCTCCATATCTTTGCATAACTTTTTTAGTTGCTAAAGCAGCAGCCTCACTTGCACGCAATGTCCCAGTAGCCATGATTGCA
GCAAATTCACGGGTGATTTCCTCTTGTACCTTGCTCCGAGCATCACCAAGAGGATCTTTCACAACCGCATTAGCAGGCGTCTTCTCCTGCTCTTC
CACAGGTTTGACCGCAGAGGGCACATTAACATTCTTCTTCTCTCCATCTTGGCTCTCGGGCTTTTTGGATTGATTAATACCGCTACTAGAGGACT
TCCCAACAGAAAGTGTCGGCTGGGAAGCAGGAGCAACAGTAGCTGGTCGGAACTGGGGTGCTTGTGGTACTGCATTAACCCTCAACGTTGATTCC
AGTTGTTGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394499] SGN-U567176 Tomato 200607 Build 2 78 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195825 [Download][View] Facility Assigned ID: FA0AAD29DA02FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.973 Expected Error Rate: 0.0020 Quality Trim Threshold: 14.5