EST details — SGN-E394530

Search information 
Request: 394530Match: SGN-E394530
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172701Clone name: TUS-14-D11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172701 is on microarray TOM1 spot ID 1-1-6.4.20.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10825 [cLEC-6-G11] Trace: SGN-T24081 EST: SGN-E202420 Direction: 5' Facility: TIGR
Clone: SGN-C172701 [TUS-14-D11] Trace: SGN-T195855 EST: SGN-E394529 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E394530Length: 616 bp (868 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394530 [] (trimmed) GCTAAACCAGCTGTTCCTAATGGCACTGCTGCTCCGGCTCCCGCTCCTGCCGCCGCCGCCGCCGCCAACGGCGGAGCTAATCAGACGTTTCCGGC
GAACAAAGCTCAACTTTACAACGCTGCTAGACCTACTTACCGTCCTATGCCGCCTCCCCGCCGTAAACACCGACGGAGCTGCTGTTGTTGTTGTT
GCCTGTTTATTACCTTATTCATAATCACTATTGTTCTACTTGCTGCAATTGCCGGTGCGATTTTCTGGGTACTTTACCGTCCTCAGAGGCCTTCC
TTCTCTGTTTCTACTCTTCAAGTCTCTCAATTAAATCTTACTTCTACGAAACTCGCGTCGAAATTCAGTCTCACCGTTGTTGCTCGTAATCCAAA
CAAAAAGATCTCTTTCTTCTACGATCCTATTAACATTTCGTTCAATTCCGCCGATGTTGATATCGGAGACGGATCGTTACCGGCTTTTACGCATA
ATAGGAAAAACACAACGACGTTGAAGACAGTAGTGTCAAGTTCAGGAAAAAACCTGGACGATTCTGCGATTTCTAATCTGAAATCTAAATTGAAG
AATAAGAAGAGTCTGCCATTGGAGATAAAGCTTGATACAAAAGTTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394530] SGN-U566344 Tomato 200607 Build 2 81 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195856 [Download][View] Facility Assigned ID: FA0AAD2CB06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.984 Expected Error Rate: 0.0028 Quality Trim Threshold: 14.5