Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E394535

Search information 
Request: 394535Match: SGN-E394535
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172713Clone name: TUS-14-D23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172713 is on microarray TOM1 spot ID 1-1-2.4.20.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10842 [cLEC-6-G6] Trace: SGN-T24123 EST: SGN-E202462 Direction: 5' Facility: TIGR
Clone: SGN-C172713 [TUS-14-D23] Trace: SGN-T199629 EST: SGN-E398303 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394535Length: 629 bp (843 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394535 [] (trimmed) GTCAGCTGTAGTTTACAAAAGTTGGGTTTTTCCTGAACAAGCACTTCCAGCAGATCTTATTAAGAGAGGAGTGGCCGTAGAGGACTCAAGTTCCC
CACATGGTGTTCGCTTGCTAATTCAAGACTATCCTTATGCTGTTGATGGCTTACAAATATGGTCAGCAATCAAAAGTTGGGTAACAGAGTATTGC
AACTTCTATTATAAATCAGATGAATCACTTTTGAAAGATAATGAACTCCAAGCGTGGTGGAAGGAACTACGAGAAGAAGGACATGGTGACAAGAA
AGATGAACCTTGGTGGCCTAAAATGCAAATTCGGCAAGAGCTAATAGATTCTTGCACTATTATTATTTGGATAGCATCAGCACTTCATGCAGCAG
TCAATTTTGGGCAATATCCTTATGCAGGGTACCTCCCAAATCGCCCAACATTAAGTCGAAGATTCATGCCTGAGCCAGGAACTCCTGAGTATGAA
GAACTCAAGACAAATCCTGACAAGGCATACTTGAAAACAATCACTCCTCAACTACAGACATTACTAGGAATTTCTCTCATAGAAATATTATCAAG
GCATGCATCAGATGAGATTTACCTTGGACAACGGGACTCATCCCGAATGGACAAAGGAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394535] SGN-U580560 Tomato 200607 Build 2 52 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195861 [Download][View] Facility Assigned ID: FA0AAD2CB12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.969 Expected Error Rate: 0.0037 Quality Trim Threshold: 14.5