EST details — SGN-E394578

Search information 
Request: 394578Match: SGN-E394578
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172857Clone name: TUS-14-J23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172857 is on microarray TOM1 spot ID 1-1-2.2.20.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C14147 [cLEC-7-A17] Trace: SGN-T25200 EST: SGN-E201918 Direction: 5' Facility: TIGR
Clone: SGN-C172857 [TUS-14-J23] Trace: SGN-T195903 EST: SGN-E394577 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E394578Length: 710 bp (849 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394578 [] (trimmed) CTTTAGAAGAGGAACCATCAGCAATTGGTGTTGGCACAGTGGGGTCATCAGAGGCCATAATGTTAGCGGGCCTAGCCTTCAAGAGGAACTGGCAA
AACAAACGCAAAGCTGAGGGAAAGCCTTATGATAAGCCCAATATTGTTACTGGCGCTAATGTTCAGGTGTGTTGGGAGAAATTTGCAAACTACTT
TGAAGTGGAATTGAAAGAAGTAAAGCTAAGGGAAGGGTACTATGTGATGGATCCAATGAAAGCTGTGGAAATGGTAGATGACAACACCATTTGTG
TTGCTGCTATTTTGGGTTCAACTCTTAATGGAGAATTTGAAGATGTCAAACTCTTGAATGATCTACTCATTCAAAAGAACAAGCAAACTGGATGG
GATACACCAATTCATGTGGATGCAGCTAGTGGTGGATTCATTGCACCATTTATCTACCCAGAGTTGGAATGGGACTTTAGGCTTCCTTTAGTGAA
AAGTATTAATGTGAGTGGACACAAATATGGACTTGTCTATGCTGGTATTGGTTGGGTTATTTGGAGGACTAAACAAGACTTGCCTGAACAACTCA
TTTTTCACATCAATTATCTTGGTGCTGATCAACCTACTTTTACTCTCAATTTCTCCAAAGGTTCAAGTCAAATCATTGCTCAATATTATCAACTT
ATCCGGTTGGGCTACGAGGGATATCGAAAGGAAATGGAAAATTGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394578] SGN-U578934 Tomato 200607 Build 2 18 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195904 [Download][View] Facility Assigned ID: FA0AAD2CE12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.956 Expected Error Rate: 0.0059 Quality Trim Threshold: 14.5