EST details — SGN-E394618
| Search information |
| Request: 394618 | Match: SGN-E394618 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183441 | Clone name: TUS-42-C23 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183441 is on microarray TOM1 spot ID 1-1-2.3.1.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183441 [TUS-42-C23] | Trace: SGN-T194920 | EST: SGN-E393594 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183441 [TUS-42-C23] | Trace: SGN-T195944 | EST: SGN-E399137 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183441 [TUS-42-C23] | Trace: SGN-T200235 | EST: SGN-E399136 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394618 | Length: 657 bp (831 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394618 [] (trimmed)
AAGTTGAACGTACATTCCAAAGATATACAGAAATTATTACATAAATATGTTATTCTTATGGATAAAAAGCAATGTCCATGATAACATTATTCATG
TTTTATGCTAATATATACTCATAACAACAACGGAAATAATAAAAACATTTCCTTGAACACAGTAAAAAAAATAAAATTACACATTATTATTATTT
ACATAATAAAGCTAAGTCTGAATTCGAATAATTTCGTCCTTTTGAGTTGGAATTGGAAGGTGACCTTTCTCTTGTAAACTCTTCACTGTCTCATA
TAAGCATTGTTTCACTGGTGTAAATTCCATCCCCAAATCCTTCAATTTTTGGTTTGAGAATTTGTATGGTTTTACCCTTGGCTTCGTCACATCCG
AACACTTTGTGGGGATGGGATATTCAGGGAAGAATTTGGCTAGAATTTCAACGATGTCACCACGATGAAGCACACTCGCAGCACAGAGGTAACGT
CCTGATGCTGAAGGAGTTTCATAGAGAAGTATGTGAGCTAAAGCCACATCCTTAACATGTACATATGCTTGAACTGAATTAGCATATGTTTTAGC
TGAGCCAGTAAGGTACTTGAGGATATGAAAAACACTAGCATTCACAGTATTTTGTAGCAATGGTCCAAGCACCAACACTGGATTTAT
TTTTATGCTAATATATACTCATAACAACAACGGAAATAATAAAAACATTTCCTTGAACACAGTAAAAAAAATAAAATTACACATTATTATTATTT
ACATAATAAAGCTAAGTCTGAATTCGAATAATTTCGTCCTTTTGAGTTGGAATTGGAAGGTGACCTTTCTCTTGTAAACTCTTCACTGTCTCATA
TAAGCATTGTTTCACTGGTGTAAATTCCATCCCCAAATCCTTCAATTTTTGGTTTGAGAATTTGTATGGTTTTACCCTTGGCTTCGTCACATCCG
AACACTTTGTGGGGATGGGATATTCAGGGAAGAATTTGGCTAGAATTTCAACGATGTCACCACGATGAAGCACACTCGCAGCACAGAGGTAACGT
CCTGATGCTGAAGGAGTTTCATAGAGAAGTATGTGAGCTAAAGCCACATCCTTAACATGTACATATGCTTGAACTGAATTAGCATATGTTTTAGC
TGAGCCAGTAAGGTACTTGAGGATATGAAAAACACTAGCATTCACAGTATTTTGTAGCAATGGTCCAAGCACCAACACTGGATTTAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394618] | SGN-U570355 | Tomato 200607 | Build 2 | 21 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195944 [Download][View] | Facility Assigned ID: FA0AAD30AB12RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.948 | Expected Error Rate: 0.0068 | Quality Trim Threshold: 14.5 |
Working
