EST details — SGN-E394649
| Search information |
| Request: 394649 | Match: SGN-E394649 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183723 | Clone name: TUS-42-O17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183723 is on microarray TOM1 spot ID 1-1-8.3.1.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C32453 [cLEG-1-K23] | Trace: SGN-T64441 | EST: SGN-E248378 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183723 [TUS-42-O17] | Trace: SGN-T194971 | EST: SGN-E393645 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183723 [TUS-42-O17] | Trace: SGN-T195975 | EST: SGN-E399566 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183723 [TUS-42-O17] | Trace: SGN-T200262 | EST: SGN-E399205 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394649 | Length: 655 bp (862 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394649 [] (trimmed)
GAACAAGTAAGTAAGTAAGTATATATATAGGTAGGATTACACAATTCATAGATATGATAATTGGGAGATGCTAGTGTATATCATCATCAGGCTGA
GGGTTAGGGTTATTGTTCCATGTAGTATTATTATTATTATTATAAAGTCCATAATTATTTGTCCCATAATTAGCATTAGCATATCTCATCAAATC
AGCATTGGTAGCATCCAGTTCTTTCTGAAGCCGTATAACTTGTCTTTGTAGGACAGAAATAGCTCCAACACAACCATAAACTGGATCTTTCATGC
GCGCTTCAGCTTCATAAGCAAGAGAATTCACCGCGTCTTCTCTTTGATGAGCTTCAATTTCATTCAGAAGTTTACTTACATTGCTTGCACCAAAT
ATTTTGTGTACATTTGAAAATTTTTGTGGATCTTCTGGTGGAAAATAAGGACAAAATATGCAACCTGGTAAACACTTTCTTCGCGGGGATTTACA
AGCTGCACAGGGAGGATTCGAGGAGCTGCTACTCGAACAAGACATTCTCTCGTTATAACTCTACATAATTTTTACATCATCAGATCATTATTTAG
GGACGAGGGAAAGAAATAGGTTTCATAGGATCATAGCTTTAAAACTATATGGTAAAATGAAACTTAATTTTATGTTGAAAAAAAG
GGGTTAGGGTTATTGTTCCATGTAGTATTATTATTATTATTATAAAGTCCATAATTATTTGTCCCATAATTAGCATTAGCATATCTCATCAAATC
AGCATTGGTAGCATCCAGTTCTTTCTGAAGCCGTATAACTTGTCTTTGTAGGACAGAAATAGCTCCAACACAACCATAAACTGGATCTTTCATGC
GCGCTTCAGCTTCATAAGCAAGAGAATTCACCGCGTCTTCTCTTTGATGAGCTTCAATTTCATTCAGAAGTTTACTTACATTGCTTGCACCAAAT
ATTTTGTGTACATTTGAAAATTTTTGTGGATCTTCTGGTGGAAAATAAGGACAAAATATGCAACCTGGTAAACACTTTCTTCGCGGGGATTTACA
AGCTGCACAGGGAGGATTCGAGGAGCTGCTACTCGAACAAGACATTCTCTCGTTATAACTCTACATAATTTTTACATCATCAGATCATTATTTAG
GGACGAGGGAAAGAAATAGGTTTCATAGGATCATAGCTTTAAAACTATATGGTAAAATGAAACTTAATTTTATGTTGAAAAAAAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394649] | SGN-U585494 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195975 [Download][View] | Facility Assigned ID: FA0AAD30AH09RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.949 | Expected Error Rate: 0.0077 | Quality Trim Threshold: 14.5 |
Working
