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EST details — SGN-E394691

Search information 
Request: 394691Match: SGN-E394691
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183478Clone name: TUS-42-E12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183478 is on microarray TOM1 spot ID 1-1-5.1.1.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C18227 [cLED-22-I2] Trace: SGN-T54168 EST: SGN-E238102 Direction: 5' Facility: TIGR
Clone: SGN-C183478 [TUS-42-E12] Trace: SGN-T196017 EST: SGN-E399246 Direction: 5' Facility: INRA
Clone: SGN-C183478 [TUS-42-E12] Trace: SGN-T199419 EST: SGN-E398093 Direction: 3' Facility: INRA
Clone: SGN-C183478 [TUS-42-E12] Trace: SGN-T200288 EST: SGN-E399245 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394691Length: 346 bp (877 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394691 [] (trimmed) CAGTAAACAACCCATTATATTTATGGGGACTTCTTAAAATATGAAAATTTTACTAAAATAACTTACTTTAAGGAAAATATTTTTCCGGAAAAGCG
ACAAGATCCCGAGAATGACAGGAATAGGAAAAAAACCCCCTGCCTTCATCGACCATGAAACTCAAAGCACTAATAAAAAGATATTTTAAAGGGGA
GTTATGACCCCCATTAAACCTAAATAACTTGACTTTGTTTCCCACCATGCTATTTCCACTACAGCAACTTTTTATTACATAAATAATTGTAAAAA
AAACAAAGGGAACTTTAAATGCCCCTTTCAAATTTCCATTTTATTGTAAACTAACGCTCGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394691] SGN-U592070 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196017 [Download][View] Facility Assigned ID: FA0AAD30BC06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.889 Expected Error Rate: 0.0303 Quality Trim Threshold: 14.5