EST details — SGN-E394710
| Search information |
| Request: 394710 | Match: SGN-E394710 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183584 | Clone name: TUS-42-I22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183584 is on microarray TOM1 spot ID 1-1-3.1.1.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14805 [cLEC-9-C17] | Trace: SGN-T24884 | EST: SGN-E200590 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183584 [TUS-42-I22] | Trace: SGN-T196036 | EST: SGN-E399283 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183584 [TUS-42-I22] | Trace: SGN-T196142 | EST: SGN-E394816 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183584 [TUS-42-I22] | Trace: SGN-T200310 | EST: SGN-E399282 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394710 | Length: 726 bp (862 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394710 [] (trimmed)
AACAAAACATTATTTAATAATCCAACAAAAAAAGAACAATCCAGCAATTTGTCCAACAGAACAAACATAACAAGATAATTGTTGCCACTAAGACA
CAGTACCAAGATAGCCATAGGCTAATACTTATTTCCAACTAACAACCACAAAGTACTCCAACGATAACAAATCCTTCGCCATCATCTTTAAGCAA
AATACTCTCAGAACTTCACACAAGGCAGATATGGAACTGCCAAGATATCTAACCTTAATTGTGTATTGTAGAAAATTGCTCACAAGTAGCAGAAC
TCTTTTTGTCGAGATCATTTATAAACCATGGTAGATTTACTGTTGCTTCTGCTCTAAACAGATATCCACCAAAGCCTGATCCCTCAGCCGTACAA
TTATCAATCCAACCAAGACAAGGTTTCTTAATCCAAAAGCTCCCAAATTCCTGCACCTACTAACCTCGGTCTCTACTCAACCAGTTTGAATAGCT
CGGCACAAGCTGCTCAATAGCGAGTGCCAGCAACTATCCAAGACCATCCATGCTGCAACAAAAACATAATAACCTTGGCCATACTGCAATATGAT
GATTGAACTTCGTAGCAACAGGCTAGCCGTCATTCTCCCCAGTAATTGTTAACCATCTAGTCTCACTATCCACGTCACACAAAAAAACGATCTTG
CCACAGGGACTGTCCTTGATACTGCTGAGGCAATCCCACAGATTGGTTATTTGCTTTCTGG
CAGTACCAAGATAGCCATAGGCTAATACTTATTTCCAACTAACAACCACAAAGTACTCCAACGATAACAAATCCTTCGCCATCATCTTTAAGCAA
AATACTCTCAGAACTTCACACAAGGCAGATATGGAACTGCCAAGATATCTAACCTTAATTGTGTATTGTAGAAAATTGCTCACAAGTAGCAGAAC
TCTTTTTGTCGAGATCATTTATAAACCATGGTAGATTTACTGTTGCTTCTGCTCTAAACAGATATCCACCAAAGCCTGATCCCTCAGCCGTACAA
TTATCAATCCAACCAAGACAAGGTTTCTTAATCCAAAAGCTCCCAAATTCCTGCACCTACTAACCTCGGTCTCTACTCAACCAGTTTGAATAGCT
CGGCACAAGCTGCTCAATAGCGAGTGCCAGCAACTATCCAAGACCATCCATGCTGCAACAAAAACATAATAACCTTGGCCATACTGCAATATGAT
GATTGAACTTCGTAGCAACAGGCTAGCCGTCATTCTCCCCAGTAATTGTTAACCATCTAGTCTCACTATCCACGTCACACAAAAAAACGATCTTG
CCACAGGGACTGTCCTTGATACTGCTGAGGCAATCCCACAGATTGGTTATTTGCTTTCTGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394710] | SGN-U567903 | Tomato 200607 | Build 2 | 31 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196036 [Download][View] | Facility Assigned ID: FA0AAD30BE11RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.954 | Expected Error Rate: 0.0024 | Quality Trim Threshold: 14.5 |
Working
