EST details — SGN-E394715
| Search information |
| Request: 394715 | Match: SGN-E394715 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183622 | Clone name: TUS-42-K12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183622 is on microarray TOM1 spot ID 1-1-5.3.1.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C25544 [cLEF-13-D4] | Trace: SGN-T59616 | EST: SGN-E245114 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183622 [TUS-42-K12] | Trace: SGN-T195047 | EST: SGN-E393721 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183622 [TUS-42-K12] | Trace: SGN-T195048 | EST: SGN-E393722 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183622 [TUS-42-K12] | Trace: SGN-T196041 | EST: SGN-E399292 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183622 [TUS-42-K12] | Trace: SGN-T200460 | EST: SGN-E399580 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394715 | Length: 685 bp (869 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394715 [] (trimmed)
GCCTGAGAAGTTGTGCTGCTTTTTACATCTGTTGGTTTTACCAAACATTAGACATGTCTAGATAAACAAAATAAATGGGCACAACAATTTGAGAT
GCTCTTGCCTAAGAAGTCTTGCTGCTTTTTACATCTGTCTGTTTTACCACACATTAGACATGTCTAGATAAACAAAATAAATGGGTACAACAATT
TGAGAGGCTCTTGCCTAAGAAGTTATGCTGCTTTTTATGTCTGTTGGTTTTGCCACACATTAGACATGTCTAGATTTTTTTTTTAAAAAAAAAAC
TAATGGGCATTACAATAACCTGATGAATCCTCATAGTGATTGTTGGATCCTTTGTTTTATGGTTTGTGCTCTTCCTTTTCTGTCGACATCTAACT
AGCTTTAGCTTTGGACCATACTCTATGCTTGTTCTCTAGTTACATGCGTATTTAGAGATATCATCCGAGGGTTTGATCCAGGCTTGGATGGTGGA
GTTTTCAAAATACGCTTGTAATGGTGCCCTGATAAGATGTATGCGTCCACGATCAGTCAACGGACCAGGTCCCTTAACTCAACAAGAACAGGAAT
AAAGAATAAACGATGAACAGAAAACCACACAAGCAATTTACGTGGAAACCTCCTTGCTCAGGGAAATAAAAACCACGACCTGTTGCACAAGATTT
TCAACTGTTTCTCTAATCTT
GCTCTTGCCTAAGAAGTCTTGCTGCTTTTTACATCTGTCTGTTTTACCACACATTAGACATGTCTAGATAAACAAAATAAATGGGTACAACAATT
TGAGAGGCTCTTGCCTAAGAAGTTATGCTGCTTTTTATGTCTGTTGGTTTTGCCACACATTAGACATGTCTAGATTTTTTTTTTAAAAAAAAAAC
TAATGGGCATTACAATAACCTGATGAATCCTCATAGTGATTGTTGGATCCTTTGTTTTATGGTTTGTGCTCTTCCTTTTCTGTCGACATCTAACT
AGCTTTAGCTTTGGACCATACTCTATGCTTGTTCTCTAGTTACATGCGTATTTAGAGATATCATCCGAGGGTTTGATCCAGGCTTGGATGGTGGA
GTTTTCAAAATACGCTTGTAATGGTGCCCTGATAAGATGTATGCGTCCACGATCAGTCAACGGACCAGGTCCCTTAACTCAACAAGAACAGGAAT
AAAGAATAAACGATGAACAGAAAACCACACAAGCAATTTACGTGGAAACCTCCTTGCTCAGGGAAATAAAAACCACGACCTGTTGCACAAGATTT
TCAACTGTTTCTCTAATCTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394715] | SGN-U566140 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196041 [Download][View] | Facility Assigned ID: FA0AAD30BF06RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.962 | Expected Error Rate: 0.0099 | Quality Trim Threshold: 14.5 |
Working
