EST details — SGN-E394723
| Search information |
| Request: 394723 | Match: SGN-E394723 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183676 | Clone name: TUS-42-M18 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183676 is on microarray TOM1 spot ID 1-1-7.1.1.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183676 [TUS-42-M18] | Trace: SGN-T196048 | EST: SGN-E394722 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183676 [TUS-42-M18] | Trace: SGN-T200325 | EST: SGN-E399311 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183676 [TUS-42-M18] | Trace: SGN-T200324 | EST: SGN-E399310 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394723 | Length: 643 bp (828 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394723 [] (trimmed)
GTGGAGCTAGGTAGGACCTTAGACCTGGCAGAATGTGCTTTGTGGATGCCATGCCAAGGAGGCCTGACTTTGCAACTTTCCCATAATTTAAACAA
TCTAATACCTCTGGGATCTACTGTGCCAATTAATCTTCCTATTATCAATGAAATTTTTAGTAGCCCTGAAGCAATACAAATTCCACATACAAATC
CTTTGGCAAGGATGAGGAATACTGTTGGTAGATATATTCCACCAGAAGTAGTTGCTGTTCGTGTACCGCTTTTACACCTCTCAAATTTTACTAAT
GACTGGGCTGAACTGTCTACTAGAAGTTATGCGGTTATGGTTCTGGTTCTCCCGATGAATGGCTTAAGAAAGTGGCGTGAACATGAGTTAGAACT
TGTGCAAGTTGTCGCAGATCAGGTTGCTGTCGCTCTTTCACATGCTGCAATTTTAGAAGATTCCATGCGAGCCCATGATCAGCTCATGGAACAGA
ATATTGCTTTGGATGTAGCTCGACAAGAAGCAGAGATGGCCATCCGTGCACGTAACGACTTCCTTGCTGTGATGAACCATGAAATGAGAACGCCC
ATGCATGCAGTTATTGCTCTGTGCTCTCTGCTTTTAGAAACAGACTTAACTCCAGAGCAGAGAGTTATGATTG
TCTAATACCTCTGGGATCTACTGTGCCAATTAATCTTCCTATTATCAATGAAATTTTTAGTAGCCCTGAAGCAATACAAATTCCACATACAAATC
CTTTGGCAAGGATGAGGAATACTGTTGGTAGATATATTCCACCAGAAGTAGTTGCTGTTCGTGTACCGCTTTTACACCTCTCAAATTTTACTAAT
GACTGGGCTGAACTGTCTACTAGAAGTTATGCGGTTATGGTTCTGGTTCTCCCGATGAATGGCTTAAGAAAGTGGCGTGAACATGAGTTAGAACT
TGTGCAAGTTGTCGCAGATCAGGTTGCTGTCGCTCTTTCACATGCTGCAATTTTAGAAGATTCCATGCGAGCCCATGATCAGCTCATGGAACAGA
ATATTGCTTTGGATGTAGCTCGACAAGAAGCAGAGATGGCCATCCGTGCACGTAACGACTTCCTTGCTGTGATGAACCATGAAATGAGAACGCCC
ATGCATGCAGTTATTGCTCTGTGCTCTCTGCTTTTAGAAACAGACTTAACTCCAGAGCAGAGAGTTATGATTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394723] | SGN-U580538 | Tomato 200607 | Build 2 | 122 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196049 [Download][View] | Facility Assigned ID: FA0AAD30BG09RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.980 | Expected Error Rate: 0.0040 | Quality Trim Threshold: 14.5 |
Working
