EST details — SGN-E394730
| Search information |
| Request: 394730 | Match: SGN-E394730 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183720 | Clone name: TUS-42-O14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183720 is on microarray TOM1 spot ID 1-1-3.3.1.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183720 [TUS-42-O14] | Trace: SGN-T195063 | EST: SGN-E393737 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183720 [TUS-42-O14] | Trace: SGN-T196055 | EST: SGN-E394729 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183720 [TUS-42-O14] | Trace: SGN-T196056 | EST: SGN-E399325 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183720 [TUS-42-O14] | Trace: SGN-T200335 | EST: SGN-E399324 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394730 | Length: 545 bp (854 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394730 [] (trimmed)
CTCAACCGACTACATTTGACCACTAGGCCACACTTTGATTTATTAGAATACTTTTTGTATCCACCAAATTACTGAACATGAATTATGTTATTCAC
ATAATCTAACCTTTATTCAAACTGTAGAATTATATAAATACAATTCTTAAGTCTGCAGCCAGTTTAGAGTGTGTAATGAATAGACAACCATATAC
CAAAAAGTTGATAAATGTAACTTGGGGGTAAACACGAAATGAGGCTCGATTTATCAAGAACGTGTAGCTGTAAGATCGTGATGAACCTCAATAGT
GAATGCCCAGCGTTTTATATCAAGGAAATTAAATGATATTTCAGCTGCTGAAAGTTTGATCACCTTCTTCAATTGGTGTTGTTTCACTCATCTGT
AGGCCAGAACTCGAACCATTAGCTTCAGGGGCACCACCAGATTCGGAGATTCTTGTAACCCTCTGCAACTCATCTGATGAAGGAGGTAACAACTG
ATCATCAGTCAACTGTTCGTTCTGAGATGCAAACTTTTTAAGTTGGCGGAAGGCTGCAACTGCCTCTGCC
ATAATCTAACCTTTATTCAAACTGTAGAATTATATAAATACAATTCTTAAGTCTGCAGCCAGTTTAGAGTGTGTAATGAATAGACAACCATATAC
CAAAAAGTTGATAAATGTAACTTGGGGGTAAACACGAAATGAGGCTCGATTTATCAAGAACGTGTAGCTGTAAGATCGTGATGAACCTCAATAGT
GAATGCCCAGCGTTTTATATCAAGGAAATTAAATGATATTTCAGCTGCTGAAAGTTTGATCACCTTCTTCAATTGGTGTTGTTTCACTCATCTGT
AGGCCAGAACTCGAACCATTAGCTTCAGGGGCACCACCAGATTCGGAGATTCTTGTAACCCTCTGCAACTCATCTGATGAAGGAGGTAACAACTG
ATCATCAGTCAACTGTTCGTTCTGAGATGCAAACTTTTTAAGTTGGCGGAAGGCTGCAACTGCCTCTGCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394730] | SGN-U575659 | Tomato 200607 | Build 2 | 56 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196056 [Download][View] | Facility Assigned ID: FA0AAD30BH07RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.962 | Expected Error Rate: 0.0032 | Quality Trim Threshold: 14.5 |
Working
