EST details — SGN-E394755
| Search information |
| Request: 394755 | Match: SGN-E394755 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183539 | Clone name: TUS-42-H1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183539 is on microarray TOM1 spot ID 1-1-8.4.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C34278 [cLEG-30-G1] | Trace: SGN-T69019 | EST: SGN-E255293 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183539 [TUS-42-H1] | Trace: SGN-T196081 | EST: SGN-E399371 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183539 [TUS-42-H1] | Trace: SGN-T196195 | EST: SGN-E394869 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183539 [TUS-42-H1] | Trace: SGN-T196195 | EST: SGN-E399370 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394755 | Length: 627 bp (837 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394755 [] (trimmed)
CAATCCTCTATTCCAATCCTTATGTATCAGAACACCCCTTTACAACTTCTGTTTAGCTATGTCTGCAGGATCATTCTACTTATGAAAACTTATAC
CTAGAGAGCTGATAATTAGCAGTACCACCGTATGATGAAGGCTGATTTTGCATATTTTGCAAGTGTAAGAAGGAAACAGTAGAAGCAACAAATGA
TATAGTAACTCAGAGGTTGAGTAATCTACTTTGACTATCCATAAAATCAGTAGTCCACCCCTCCAAGAATTATCTATTAATCGGGGTAAGGAGTC
GTTATGCCCTGAACAAGATTGACCATCTGGCGATCACTATGATGACAACGTTGCTAGTCACAGTAGTACTGATAGTTGAGAGTGAAGCAAACAGT
GGAAGCATGTGAGAATCGATCACAAGGATGAATTTCTAGTTTTAGCTGGAAAGCCAGAAGATGGCAGCAGTGGACTTTGCAACAAAATATAATGT
ACAGAACTGTAACCCTGTATAATAATAGACCAGTTTCAGTTATGCTAATTGATACTAACTAAAAATGTGGCTACATGAGTTCTAACAGTATTCAG
AATTTTGAATGTTATGTGATCTCTAAGTACCACATGAGCCTATTGGATGCAAGTAGG
CTAGAGAGCTGATAATTAGCAGTACCACCGTATGATGAAGGCTGATTTTGCATATTTTGCAAGTGTAAGAAGGAAACAGTAGAAGCAACAAATGA
TATAGTAACTCAGAGGTTGAGTAATCTACTTTGACTATCCATAAAATCAGTAGTCCACCCCTCCAAGAATTATCTATTAATCGGGGTAAGGAGTC
GTTATGCCCTGAACAAGATTGACCATCTGGCGATCACTATGATGACAACGTTGCTAGTCACAGTAGTACTGATAGTTGAGAGTGAAGCAAACAGT
GGAAGCATGTGAGAATCGATCACAAGGATGAATTTCTAGTTTTAGCTGGAAAGCCAGAAGATGGCAGCAGTGGACTTTGCAACAAAATATAATGT
ACAGAACTGTAACCCTGTATAATAATAGACCAGTTTCAGTTATGCTAATTGATACTAACTAAAAATGTGGCTACATGAGTTCTAACAGTATTCAG
AATTTTGAATGTTATGTGATCTCTAAGTACCACATGAGCCTATTGGATGCAAGTAGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394755] | SGN-U568637 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196081 [Download][View] | Facility Assigned ID: FA0AAD30CD01RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.962 | Expected Error Rate: 0.0099 | Quality Trim Threshold: 14.5 |
Working
