EST details — SGN-E394773

Search information 
Request: 394773Match: SGN-E394773
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183651Clone name: TUS-42-L17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183651 is on microarray TOM1 spot ID 1-1-8.4.1.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C32379 [cLEG-1-C7] Trace: SGN-T64421 EST: SGN-E248358 Direction: 5' Facility: TIGR
Clone: SGN-C183651 [TUS-42-L17] Trace: SGN-T195081 EST: SGN-E393755 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E394773Length: 681 bp (864 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E394773 [] (trimmed) AACAACTCAAATTTCATTAATTTGACTTTGTTTATAAATTTAAAAATTTGATACAAATGGTTTGATTTAATATTTGAAAAATCCGAACCAAACCC
AAATCATATACATCTTAGCCACTTGTGTAAAATAGAACTCTTTTACATAAAAAAAAAAAACTCTCTTCTCCTAAGCTATCCACAAATATAGGAAA
TCTCAAACTTCTATATCTTTTGTTACTCTTTCTCTTTTCTGCTTTTTGCTCTTTCCCTTTCTCTCATTTTGCATTTTCTGTTTCTGGGCTTTACA
ACTTTCTGCTTTCTCCTCAAACCCATCATCCATCATCTTCATTGATGCAACACGCTTCGCCTTGTAAACCTTTGATATATCATCAAGCACCTCAT
TCTCTTTACAATCAAATTTCTCCAATTGTTTCCCAAGCACCGCTTCTATTTCATGAATGAGATCCACATCATTCTGAGTAACAAAGCTGACAGCA
AGTCCACCTCGTCCAGCTCTTGCAGTACGTCCAACACGATGAACATAATCCTGTGGATACCTTGGAATGTCATAATTTACCACCAGATCAACTGT
TGGAATGTCTAAACCACGACTCGCGACATCAGTAGCGACCAATATTGGGACCTGCCCAAATTTGAATTTATGAAAAGCAGAAAGCCTCATTGACT
GGGACTTGTATGAATG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394773] SGN-U584582 Tomato 200607 Build 2 19 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196099 [Download][View] Facility Assigned ID: FA0AAD30CF09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.931 Expected Error Rate: 0.0045 Quality Trim Threshold: 14.5